Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2075 ATGAGCAAAAAGCGAAAGTTTGTAGCCGATGGAGTTTTCTTTGCGGAGCTGAATGAGGTCTTGACCAGAGAGCTTGCAGAGGATGGGTATTCTGGTGTTGAAGTTAGGGTTACGCCCATGCGGACTGAGATCATCATTAGGGCGACTCGCACTCAGAACGTTCTCGGTGAGAAGGGAAGAAGAATTAGGGAACTGACTTCTATTGTTCAGAAGCGTTTTAAGTTCCCTGAGAACAGCGTTGAGCTTTATGCTGAGAAGGTCAACAACAGGGGACTCTGTGCTATTGCTCAGGCAGAGTCTCTGTGTTACAAGCTTCTTGGAGGGCTTGCTGTCCGAAGGGCTTGCTATGGTGTCCTTAGGTTTGTTATGGAAAGTGGTGCCAAAGGTTGTGAGGTTATTGTTAGTGGTAAGCTCAGGGCCCAGCGTGCCAAATATATGAAATTCAAGGATGGGTACATGATATCATCCGATCAGCCTGTCAAGGAATATATTGACTCTGCTGTGAGGCATGTGCTTCTGAGACAGGGTGTTCTTGGTATCAAGGTGAACATTATGCTTGATTGGGATCCTAAGGGCAAGCAAGGCCCGACTAAACCCATTCCGGATCTTGTCACCATCCATCCGCCAAAAGGAGGAAGACGAAGATGGCTACCACCTCCGTTTCTACGATCACCACTCTTTTCTTCCTTCTCTTCTTCGTCTACTACATGGACTCTTTCTACCTTCCCAGCAACAATCCCATCCTCAGCTTGGTCAACAATACCCGGTTTATTACATGCTGCAAGACAGAGCCAGCCTTACAACTTGTCGATGCAGCAGCATAATATCAGTGATCCAGCCACAACTGTCCCTTCTAGCCACCCCCAAGCTCAGCCAAATCAGACAATGGCTCCACCACCTGCAGCTTACAATCCCATCAGAAATGTTCCCATTCCGAAGGCTGAAATGGCAGCTAGCACATACAGAACCGCCACTACAAATAAACTCTGAGAACTCAAGCCGCCTGTAGCTGCTACTTCGCGTGGTTCTGGAAAGCATCCTCAGCTCATGCCTTCAACTCCTCGGTGGGCCGTTGCCAATGGTGCTGGTGTTATATTAAGTGTTTTGAGATGA 1113 0.4816 MSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSIVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLCYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKYMKFKDGYMISSDQPVKEYIDSAVRHVLLRQGVLGIKVNIMLDWDPKGKQGPTKPIPDLVTIHPPKGGRRRWLPPPFLRSPLFSSFSSSSTTWTLSTFPATIPSSAWSTIPGLLHAARQSQPYNLSMQQHNISDPATTVPSSHPQAQPNQTMAPPPAAYNPIRNVPIPKAEMAASTYRTATTNKLXELKPPVAATSRGSGKHPQLMPSTPRWAVANGAGVILSVLR 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2075 370 FunFam 40S ribosomal protein S3 89 219 - -
Dere01g2075 370 ProSiteProfiles Type-2 KH domain profile. 17 88 IPR004044 GO:0003723
Dere01g2075 370 SUPERFAMILY Ribosomal protein S3 C-terminal domain 89 187 IPR036419 -
Dere01g2075 370 CDD KH-II_40S_S3 1 91 - -
Dere01g2075 370 Gene3D - 1 88 IPR015946 -
Dere01g2075 370 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 6 95 IPR009019 GO:0003723
Dere01g2075 370 ProSitePatterns Ribosomal protein S3 signature. 143 179 IPR018280 -
Dere01g2075 370 Pfam KH domain 16 89 IPR004044 GO:0003723
Dere01g2075 370 PRINTS Protein GIGANTEA signature 340 358 IPR026211 GO:2000028
Dere01g2075 370 PRINTS Protein GIGANTEA signature 358 370 IPR026211 GO:2000028
Dere01g2075 370 MobiDBLite consensus disorder prediction 265 292 - -
Dere01g2075 370 FunFam 40S ribosomal protein S3 1 88 - -
Dere01g2075 370 MobiDBLite consensus disorder prediction 265 307 - -
Dere01g2075 370 NCBIfam 30S ribosomal protein S3 4 187 IPR005703 GO:0003735|GO:0006412|GO:0015935
Dere01g2075 370 Gene3D - 89 213 IPR036419 -
Dere01g2075 370 Pfam Ribosomal protein S3, C-terminal domain 103 184 IPR001351 GO:0003735|GO:0006412
Dere01g2075 370 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2075 Dere-ChrDere01 34751681 34752919 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2075 1 210 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 90.000 8.21e-140 395