Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2061 ATGTATGGACAAGCCAAGCACTATAGCGAGGTGGATCGAAGGCATGGGAAGAGGCCTCTTCCTTCTGATCATGATGCATCAGAAGAGAAAAGAGAAGATTTCATGTTCCTTGCTTACCCATCATCATCTGATCAGACCCAGAAGGAAGAAACTTCTCCCTCTCCCTTTTCGTATCTTATCAGCACCAGTGACTCTAATACCTTCTCAATCCCAATTCCAATCACACATGGGCAAGTAAGCTCCTCTTCTGGCTTGATCCAGAAGCAGGACCCATCCCAGCCAATACATCAAGATCAAGGTAATAATGTGAGAAAAAGAAACTATAGAGGAGTAAGGCAGAGACCGTGGGGGAAATGGGCAGCCGAAATCCGAGACCCTAAAAAGGCAGCTAGAGTGTGGCTTGGCACCTTTGAGACGGCAGAGGATGCAGCCGCTGCTTACGATGCTGCAGCCTTGAAGTTCAAAGGAAACAAAGCCAAGCTTAACTTCCCTGAACGTGTTGCTTTACCTACAACCCTCCCTTCATCACAAAGCCAGTTTCAGGCTGCTCCTACGACTTCGCCGCCGCCATCTGAGGTGGCGCAACCGGTATCTCGGCCTCCAGCATCACCTCCTTTGTCGGACGAAGGGTTCCCTAACCTCTTTCAGTACGCGCAGCTGCTTCGTGGTGATGATGATGATCTTCAAAGAGCTGTTTCAGGACTCTATAATTATCATCAGAATGAGCCGTTTCTTTATGATTCTTCTTCATTTTTCTCTTCCTCATCAGCATCGTCCTCTTCGTCTGCTTCCATGTCTGTGTCCGATCAACAGCAGGTTCAAGATACGCAGAGGGCACAAAGGGGAGATTATGGTGCTTGCAGTGGGAGAGCGGGTAAGCATGCCCGTTCGTAG 894 0.4888 MYGQAKHYSEVDRRHGKRPLPSDHDASEEKREDFMFLAYPSSSDQTQKEETSPSPFSYLISTSDSNTFSIPIPITHGQVSSSSGLIQKQDPSQPIHQDQGNNVRKRNYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAAAYDAAALKFKGNKAKLNFPERVALPTTLPSSQSQFQAAPTTSPPPSEVAQPVSRPPASPPLSDEGFPNLFQYAQLLRGDDDDLQRAVSGLYNYHQNEPFLYDSSSFFSSSSASSSSSASMSVSDQQQVQDTQRAQRGDYGACSGRAGKHARS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2061 297 PANTHER DNA-BINDING DOMAIN 54 267 IPR044808 GO:0003700|GO:0009873
Dere01g2061 297 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Dere01g2061 297 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
Dere01g2061 297 MobiDBLite consensus disorder prediction 189 207 - -
Dere01g2061 297 Gene3D AP2/ERF domain 106 166 IPR036955 GO:0003700|GO:0006355
Dere01g2061 297 MobiDBLite consensus disorder prediction 172 210 - -
Dere01g2061 297 ProSiteProfiles AP2/ERF domain profile. 107 164 IPR001471 GO:0003700|GO:0006355
Dere01g2061 297 MobiDBLite consensus disorder prediction 79 106 - -
Dere01g2061 297 MobiDBLite consensus disorder prediction 251 281 - -
Dere01g2061 297 MobiDBLite consensus disorder prediction 1 58 - -
Dere01g2061 297 MobiDBLite consensus disorder prediction 79 110 - -
Dere01g2061 297 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Dere01g2061 297 MobiDBLite consensus disorder prediction 39 58 - -
Dere01g2061 297 MobiDBLite consensus disorder prediction 172 188 - -
Dere01g2061 297 MobiDBLite consensus disorder prediction 7 35 - -
Dere01g2061 297 FunFam Ethylene-responsive transcription factor 2 106 165 - -
Dere01g2061 297 SUPERFAMILY DNA-binding domain 107 165 IPR016177 GO:0003677
Dere01g2061 297 SMART rav1_2 107 170 IPR001471 GO:0003700|GO:0006355
Dere01g2061 297 CDD AP2 107 165 IPR001471 GO:0003700|GO:0006355
Dere01g2061 297 MobiDBLite consensus disorder prediction 251 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2061 Dere-ChrDere01 34616764 34618744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2061 89 188 AP2-EREBP Transcription Factor Family AT5G61890 71.429 8.17e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere01g2061 AP2 7.9e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2061 01 34616764 34618744 Dere01g2061 01 34616764 34618744 ECH
Dere03g0523 03 9095932 9100756 Dere01g2061 01 34616764 34618744 ECH