Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2057 ATGGAACCAGAAACCGATGTCGGTTTGATTATTACTCAAAGTTTGAGTTTTTCTGAAACCCCCTTAGGAAATTTGATGCTGAGAAGGCGACAGTTATCAATTTGGAGAGAGGGACCAGTGGAAGGGACGAAGAGTAAGAGGGAATTGAGAAGTTCGGCTAAGAGATTTCAGGTGAAGAAATGTGAAAGAAATACACTATCTCTGTTCCCTTTCTCTCTCACTCTACGCTACTTAGCTAGTGCAATGGAGAGAGAGATGCAACCAACAGCTCACGACGTCCCTTGGATGGAAGGAGAAGTTGAAGATGCTGCCTCTTGGACTAGAACTAACAACGAGAATGAGCTCAAGGACGACGACATTGCTACGGGTGGCCCTCTTACCTCTTTCAAATCCATGCTCGAAGGTGACTGGTACATGAACTCTGCTATTAATTTATCTCAACACGACCTCCTTGGTCTCCCGAATCACCAAGAAACCACAGATGTTGATTTTTGTTCAAACCCAACTGATAATTTTCTTATACAGTCAGTGGATTCGTCGTCTTCCTGTTCACCAACATTCACTCTCGACCCATCACAGTCACAGCATTTTTTACAACCCAAATCGTGTTTCCCTTCCCTCTTCAATGTCATTTGCAACAACCCCTTTGACAACGGCTTCGATTTGAGCTTTGACAGTGGGTTTCATGGTCCTTTCCGGGGAAATCATACTTCGAATTCCCCGGTTTTGATGGGTTTCTCGGCCTTGAATACTCAGTCTCAGATGGGCAACTTCGAGCTGAGTTCAAACTCCGAGTTTCCAGCTACTCGGCTGCTGCCAGTAGCTGACAATGCCCTCGCATTAGGTGGCGGGTTTTGTCGGACGGGTTTAGAAGGGTTTGATAATCCGGGAGGTGCTCTGTTGTTGAACCGGCCTAAGGTTTTACGACCTCTAGAAGTTTTCCCTCCAGTGGGTGCGGCACCGACTCTCTTTCAGAAGCGAGCGGCGCTTCGTCAAAGTTCAGGAGGAGCTGATAGATTGGGAACTTTGGAGATATCAGCGTCGACATTCGAAAATTGTTCCACAAGGTTGGAGAACATGGAGAGGAAGAGGAAGAAAATCGAAGATGGCGAAATTGAGGAAGCTAGCATCGATGCGTCAGGGCTGAATTATGATTCTGATGAGCTTAATGAGAATGGCAAGGTGGAGGAAAATGCTTATAATGGAGTAAGCAATTCTAATGCAAATAGTACTGTCACAGGTGGAGACCAGAAGGGGAAGAAAAAGGGACTACCAGCGAAAAATTTGATGGCCGAGAGGCGGCGGAGGAAGAAACTCAATGATAGGTTGTACATGCTTAGGTCAGTTGTGCCGAAGATTAGCAAGATGGATAGGGCTTCGATACTTGGGGATGCAATCGACTATTTGAAAGAGCTACTGCAGCGGATTAATGATCTTCATAATGAGCTGCAGTCAGCTCCACCTGGCTCATTGCCGCCACCATCTACAAGCTTCCACCCTTTAACACCTACTCCGTCAACCCTTCCGAGTCGGGTCAAGGAAGAGCTATGCCATACCTCCTTGCCAAGCCCTAAAAACCAAGCTGCAAGGGTGGAGGTTCGAGTTAGGGAAGGGAGAGCTGTCAACATCCATATGTTTTGTGCCCGTAGACCAGGTCTTTTGCTTTCCACCATGAGGGCTTTGGACAGCCTTGGCTTAGATGTTCAGCAAGCTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAGAGCTGAGCAATGCAGAGAAGGGCAAGATGTCGTACCTGAGCAAATCAAAGCAGTACTGTTGGATTCAGCAGGTTTCCATGGTATGATCTGA 1845 0.4667 MEPETDVGLIITQSLSFSETPLGNLMLRRRQLSIWREGPVEGTKSKRELRSSAKRFQVKKCERNTLSLFPFSLTLRYLASAMEREMQPTAHDVPWMEGEVEDAASWTRTNNENELKDDDIATGGPLTSFKSMLEGDWYMNSAINLSQHDLLGLPNHQETTDVDFCSNPTDNFLIQSVDSSSSCSPTFTLDPSQSQHFLQPKSCFPSLFNVICNNPFDNGFDLSFDSGFHGPFRGNHTSNSPVLMGFSALNTQSQMGNFELSSNSEFPATRLLPVADNALALGGGFCRTGLEGFDNPGGALLLNRPKVLRPLEVFPPVGAAPTLFQKRAALRQSSGGADRLGTLEISASTFENCSTRLENMERKRKKIEDGEIEEASIDASGLNYDSDELNENGKVEENAYNGVSNSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELQSAPPGSLPPPSTSFHPLTPTPSTLPSRVKEELCHTSLPSPKNQAARVEVRVREGRAVNIHMFCARRPGLLLSTMRALDSLGLDVQQAVISCFNGFALDVFRAEQCREGQDVVPEQIKAVLLDSAGFHGMI 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2057 614 MobiDBLite consensus disorder prediction 399 425 - -
Dere01g2057 614 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 426 493 IPR036638 GO:0046983
Dere01g2057 614 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 423 472 IPR011598 GO:0046983
Dere01g2057 614 Coils Coil 350 370 - -
Dere01g2057 614 MobiDBLite consensus disorder prediction 483 509 - -
Dere01g2057 614 Gene3D - 417 486 IPR036638 GO:0046983
Dere01g2057 614 CDD bHLH_AtAMS_like 426 497 - -
Dere01g2057 614 SMART finulus 429 478 IPR011598 GO:0046983
Dere01g2057 614 CDD ACT_UUR-ACR-like 543 584 - -
Dere01g2057 614 Pfam Helix-loop-helix DNA-binding domain 430 472 IPR011598 GO:0046983
Dere01g2057 614 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 321 610 - -
Dere01g2057 614 MobiDBLite consensus disorder prediction 399 416 - -
Dere01g2057 614 FunFam BHLH transcription factor 419 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2057 Dere-ChrDere01 34521341 34527952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2057 127 587 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 57.113 5.60e-149 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere01g2057 HLH 2e-09 No_clan