Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2041 ATGCAGTCGCCTTGCGATTTCTGCGACTCAAGAATGGCGTTACTGTTCTGTAGAGCTGACTCAGCAAAGCTCTGTTTGCTATGCGACCAGCAAGTTCATTCCGCCAATGCTGTCTCCCTCAACCACCTTCGTTTCAAGATTTGCGACACCTGCAAACACCAAGCCGCCACGGTTCGCTGCTCAACCGAAAACCTTATGCTCTGCCAACACTGTGATTGGGACACTCACTGCAACTCTTCTTTACCTTCCTCGCTCCACCTGCGCACCCCAATCCATGGCTTCTCTGGCTGCCCCTCCATCATTGAGCTTGCCTCACTACTTGGGTTGGATTTGAAACCGACTAATTTGGTCACCGTTGATTCTCAGACATGTGTCATCCCAAAATTTGATTCCTGTGTTTCTTCTACCTCATTTGAAGGTCTGAATTTGAGGTATGGGAGGAATAAGGACGAGGTGTACGAGCAAATAGTGGAAATGGGAAGCACGAATTTAGGCGAAGTAGATGAGGATGGAGCTGATTTGGGTCTCGGAACGCCATTGAGTCCTGAACTGTACAATGAGAACGATGATGTTTTGCTGCCGGAGCAGCAAACGCCGTTCTCGTCTTTGTTTATGTTGGCAGATGACGTGGACATTACAGAAAACGATGGAGATCTGCTGTGGGATTGTAACACCACATGTCGGGCTTCTCAGTTATGGGATTTTAAATCCGCAAAATCAAGAGATTGGGGAGAACAAAAAACAGTGACATTTGGTGGTGCAGAATCATTGCAAGATCTATGCAATATCAATATGAATGCCTCAACGATTGGTGTTGATGTGCTGTCAACATGTGACCAATCAGAGGAGTCACCATCGGCCCATGCGATGAAAGAAGAAGAAAGCAACAAAAAATGTAGAGGTGGATTATCATCGAAGTCAAAGTCGACAGAATCCGTAAGGAAGGTGACAATGATGGAGCACGTTGAGGGTAGGAGTGAAAATGGTAGGTCGTCTGTGAAAACCAATGTAACATCAGAAGCCTTAGCCAAAAACAGAGGTGATGCCATGCTACGCTACAGAGAGAAGAAGAAAACTCGAAGGTATGATAAGCAGATTCGGTACGAATCAAGGAAGGCGAGTGCTGATATGAGAAAACGAGTTAGAGGGCGTTTTGTTAAGGCATCTGATACAATAGATGCGGATACTTGA 1191 0.4601 MQSPCDFCDSRMALLFCRADSAKLCLLCDQQVHSANAVSLNHLRFKICDTCKHQAATVRCSTENLMLCQHCDWDTHCNSSLPSSLHLRTPIHGFSGCPSIIELASLLGLDLKPTNLVTVDSQTCVIPKFDSCVSSTSFEGLNLRYGRNKDEVYEQIVEMGSTNLGEVDEDGADLGLGTPLSPELYNENDDVLLPEQQTPFSSLFMLADDVDITENDGDLLWDCNTTCRASQLWDFKSAKSRDWGEQKTVTFGGAESLQDLCNINMNASTIGVDVLSTCDQSEESPSAHAMKEEESNKKCRGGLSSKSKSTESVRKVTMMEHVEGRSENGRSSVKTNVTSEALAKNRGDAMLRYREKKKTRRYDKQIRYESRKASADMRKRVRGRFVKASDTIDADT 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2041 396 SMART bboxneu5 1 47 IPR000315 GO:0008270
Dere01g2041 396 Pfam CCT motif 346 388 IPR010402 GO:0005515
Dere01g2041 396 CDD Bbox1_BBX-like 4 45 - -
Dere01g2041 396 ProSiteProfiles Zinc finger B-box type profile. 43 91 IPR000315 GO:0008270
Dere01g2041 396 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 390 - -
Dere01g2041 396 MobiDBLite consensus disorder prediction 285 301 - -
Dere01g2041 396 MobiDBLite consensus disorder prediction 281 313 - -
Dere01g2041 396 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Dere01g2041 396 ProSiteProfiles CCT domain profile. 346 388 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2041 Dere-ChrDere01 34407624 34409839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2041 5 390 C2C2-CO-like Transcription Factor Family AT2G33500 37.136 6.14e-74 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Dere01g2041 CCT 7.7e-16 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2041 01 34407624 34409839 Dere01g2041 01 34407624 34409839 ECH