Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2037 ATGGGAGAGCCAGCAGGCATGTACGAGTTGCTAAACCAGGCGTCGGCTTCTTCACGGAACGCCAAGAAATCACAGATGCGTCAACCTTCTTCCACTCGCACATTCCAATGCCGTTACTGTCCTCGCAAGTTCTACACCTCCCAGGCTCTCGGAGGACACCAGAACGCCCACAAGCGGGAGAGAGCCGCCGCTCGGAGCATTAACCCCACCCTCCATCCTCCTCTCGACCCCTCTCCCCAACCCCAACCCCAACCTCAACCCCATTTCTTCGACCCCTATTGGCTCCAAGTTGAGCCCATTCACATCACCACCCATCATCTTCCTCCTCCTGCTGCTGCTGCTGCTGCCGCTGTTGCTTCCTCCACCCCTACGCCTTCTGATGCTCTTGTTGACCACGTAAACCATCTTGACCTCACTCTTCGCTTATGA 429 0.5664 MGEPAGMYELLNQASASSRNAKKSQMRQPSSTRTFQCRYCPRKFYTSQALGGHQNAHKRERAAARSINPTLHPPLDPSPQPQPQPQPHFFDPYWLQVEPIHITTHHLPPPAAAAAAAVASSTPTPSDALVDHVNHLDLTLRL 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2037 142 SUPERFAMILY beta-beta-alpha zinc fingers 32 62 IPR036236 -
Dere01g2037 142 Gene3D Classic Zinc Finger 12 71 - -
Dere01g2037 142 MobiDBLite consensus disorder prediction 48 90 - -
Dere01g2037 142 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 12 71 IPR044246 GO:0009788
Dere01g2037 142 MobiDBLite consensus disorder prediction 1 34 - -
Dere01g2037 142 MobiDBLite consensus disorder prediction 72 88 - -
Dere01g2037 142 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Dere01g2037 142 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Dere01g2037 142 MobiDBLite consensus disorder prediction 11 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2037 Dere-ChrDere01 34367621 34368049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2037 29 65 C2H2 Transcription Factor Family AT5G14010 86.486 6.45e-17 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere01g2037 None None None