Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2034 ATGCTCATACGACGCAACAAAGTTATCGGTGGCATCACATATCGCACATTCCTAAACGCCAAGTTCGGTGAGATCGCCTTATGTGCAGTACAAGACAATGAGCAATCCAAAGGTTATGGTACCAGACTCATGAATCACTTGAAACAGCATGCACGTGACGTTGAAGGGTTAACTCATCTACTCACTTGTCTTTACCCTAATGCTGCTGAGTTCTTCACCAAGCAAGGGTTTTCGCAAGAGATTCACTTGGACAAACATGAATGGGAAGGCTATATTAAGGAATACGAGGGAAGGTTTCTCATGGGATGCGAGGTTTATCCTAAGGTTCCTTACACTGATTTATCAGCCATGATTCGTTTGCAAAAGCAGGCAGTTTGTGACAGGATCAGACAGGTCTTAAGCGACGACGCTACTTATCAGAAGGAGTTGCGTGTGGTTCTGCGTTGGCTTCTGAAGTCAATGAAGGATCATGAGGATGCTTGGCCATTCATAAAGCCAGTGGATGCAGAGAAGGTTCCTGATTACTACGACATCATTAAAGAACCAATGGATCTGGAGACGATGTCCAAGAGGGTGGAGTCTGAGGACTATTATGTGACACTTGAGATGTTTGTTGCAGATGCGAGCAGAATGTTTGCCAATGCACGCGCCTATAACCCTCGCAATACCGTTTATTACAATGATAGCTCGTTTCAAGAGTTGGAGCGCTTAGCTATGGAGAAGGCAACCCTGCATCGCATACCCACTTGGCTGCCATCTCACACTCGCAATCCCTCCCTTCAATTTCATCTTTTGACTTCCCCAACTCTTCACAATTACACCTCCCTTCGAATCTCCCCTCCGTCTCACTTTCCATTACATAGGCGTACCTCCACGAATTGCTCAATCGCCAACGGCAGTATTTCCAATTCAACGACCAATACTGCTGCCAAGGATCCATCACTTGCAGTGAAGAAGAAAGCCGCAGATGTTTCCCCTGAGTTGAAAGGAACTTCCATATTTCTTGTTGGTATGAAAAGCTCTCTAAAGACCAGTATGGGAAAGCTGCTGGCCGATACATTACGATATTATTATTTTGACAGTGATAATTTGGTTGAAGAAGCTTCTGGTGGTGCATCTGCTGATAAATCCTTCCGATCGAGTGATGAGATTGGTTTTCGTGAATCTGAGACTGAAGTACTGAAGCAGTTATCATCTATGGGTCGACTAGTAGTTTGTGCTGGAAATGGTGCAGTGCAAAGTTCAACAAATCTGGCATTTCTGAGACATGGGATTACAATATGGATAGATGTACCACTAGACATGGTGGCGAGGGATTTATTCAACAACCAGAGTGAATTTTCTTCATTTGAAATATCTCCATCGGGGTCTCACTCAGAGGTAATGACTCAACTAGTTGCCCTGTACGACAAATACAGAGATGGATATGCTACTGCTGATTCAGTTATTTCACTTCAAAAAGTAGCCTCTAGATTAGGTTATGAGAACTTGGATGACATCACAGGAGAAGACATGACTCTGGAGGTTCTTAAAGAGATAGAGAAGCTGACCAGGTCGAAGAAGATGATGGAAGAAGCTGCAAGACCTTTTTGA 1593 0.4401 MLIRRNKVIGGITYRTFLNAKFGEIALCAVQDNEQSKGYGTRLMNHLKQHARDVEGLTHLLTCLYPNAAEFFTKQGFSQEIHLDKHEWEGYIKEYEGRFLMGCEVYPKVPYTDLSAMIRLQKQAVCDRIRQVLSDDATYQKELRVVLRWLLKSMKDHEDAWPFIKPVDAEKVPDYYDIIKEPMDLETMSKRVESEDYYVTLEMFVADASRMFANARAYNPRNTVYYNDSSFQELERLAMEKATLHRIPTWLPSHTRNPSLQFHLLTSPTLHNYTSLRISPPSHFPLHRRTSTNCSIANGSISNSTTNTAAKDPSLAVKKKAADVSPELKGTSIFLVGMKSSLKTSMGKLLADTLRYYYFDSDNLVEEASGGASADKSFRSSDEIGFRESETEVLKQLSSMGRLVVCAGNGAVQSSTNLAFLRHGITIWIDVPLDMVARDLFNNQSEFSSFEISPSGSHSEVMTQLVALYDKYRDGYATADSVISLQKVASRLGYENLDDITGEDMTLEVLKEIEKLTRSKKMMEEAARPF 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2034 530 Pfam Shikimate kinase 343 473 IPR031322 -
Dere01g2034 530 Pfam Bromodomain 150 228 IPR001487 GO:0005515
Dere01g2034 530 PANTHER GH11602P 1 132 IPR037800 GO:0004402
Dere01g2034 530 SMART bromo_6 136 247 IPR001487 GO:0005515
Dere01g2034 530 Hamap Shikimate kinase [aroK]. 330 514 IPR000623 -
Dere01g2034 530 Gene3D - 315 528 IPR027417 -
Dere01g2034 530 Gene3D - 119 249 IPR036427 GO:0005515
Dere01g2034 530 CDD NAT_SF 6 53 - -
Dere01g2034 530 PRINTS Bromodomain signature 172 188 IPR001487 GO:0005515
Dere01g2034 530 PRINTS Bromodomain signature 158 171 IPR001487 GO:0005515
Dere01g2034 530 PRINTS Bromodomain signature 207 226 IPR001487 GO:0005515
Dere01g2034 530 Pfam Acetyltransferase (GNAT) family 6 77 IPR000182 GO:0016747
Dere01g2034 530 CDD Bromo_gcn5_like 142 226 - -
Dere01g2034 530 Gene3D - 1 113 - -
Dere01g2034 530 FunFam Shikimate kinase 2, chloroplastic 315 525 - -
Dere01g2034 530 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1 98 IPR000182 GO:0016747
Dere01g2034 530 ProSiteProfiles Bromodomain profile. 155 226 IPR001487 GO:0005515
Dere01g2034 530 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 5 111 IPR016181 -
Dere01g2034 530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 329 483 IPR027417 -
Dere01g2034 530 PRINTS Shikimate kinase family signature 404 413 - -
Dere01g2034 530 PRINTS Shikimate kinase family signature 333 348 - -
Dere01g2034 530 PRINTS Shikimate kinase family signature 357 370 - -
Dere01g2034 530 PRINTS Shikimate kinase family signature 386 394 - -
Dere01g2034 530 PRINTS Shikimate kinase family signature 424 441 - -
Dere01g2034 530 SUPERFAMILY Bromodomain 138 229 IPR036427 GO:0005515
Dere01g2034 530 ProSitePatterns Bromodomain signature. 160 218 IPR018359 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2034 Dere-ChrDere01 34350091 34353618 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Dere01g2034 SKI 4.4e-24 CL0023