Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2017 ATGCCGCCGAAGAGGGAAAAGGGTTGGGACAAGCACTTCATTCCTTTGGCAAATCCAAAGGGGGGGGAAAAGAATAAAAAAACAAACATGATCAATTCACTTTGTGGAAGTTCGTTGTCCCTCAAGAGTGAAAACTCATGCACCAACACCAAACTTCAACCTACTTCCTCAAACGAGTCAGGTTTGCAATCTAGAAAAAATGCCACTCAATCCTCTGATCATTTAGAGCAGACTAGTCTAACCCCACCAAGCTTAAATCTTCCTGCTTTCAAATTTGACTTGGACGGAGATGTGCAAGTCGAATCACCAGATAGTTCAATGTGGGAGTCTTTCTTCTCCGATCAATTAGACCCTGATTTCATGATCTCTTCGCCTGTGAGGAATATGCCTTCCCCACAGGCTTCTACTTTCAACTGTAACTACAATTATGCTCAAGCAATGCAGGGGCAGAGTCTTTCAGGATGTTCGCCTCCTCGCTTCTCGTCCCAAATTGGAGCATTTAGCAGCACCCACAAAGGGAAGGGACTTAGTCCTCTCCATAGGGTATTTAACTCCCCAAACAACCAGTATATGCAGACTGTGGAGAACCTTTCACTCCCAGCCATAGAAGAATTCTTGGAGGACTATCAAGGAGATCATGGGCTCGCAGGAGGATACTCATCCACCAAACTGTCAGATATTGGAAGTTCATCAGAATGCTTTGACATGTCTAATTCCATTCCATCCATTTTGGACAGTTTGGCAATGGCTAATTCTTCAAGACACTGCGGATCGGTGAATGAAGAATCTTCAGTACCGGGTAGCTCTCAACTTTGCCAAGAGAGTGACGTGTATCAGATGAGTGCATCTCTTTCACAAGCTCTGCAGCAAGAACGCCAGCAAGAGAAACAGCAAAAGCAGCAGTCAGAACAACAGTCACAACCACAGCCACATAGCTTGATGGTGCCAATCCCTATTGGGGCCGAGCAGGAGCAAGACAGTGGACTTCAACTGGTTCACCTGCTATTAGCTTGTGCAGAAGCAGTGGCCAAAGAAGAATACATGTTGGCAAGAAGGTACTTGCACCATCTGAATCGTGTAGTAACACCTCTCGGTGACTCCATGCAACGAGTAGCATCCTGTTTCACCGAAGCCTTAAGCGCAAGACTCGCAGCCACTCTCACCACCAAATTACCGATCACCAACTCCTCCAACCCCAAGCCATCCTGCTCGGGTTTCCCGCCAAACTCCATAGAAATCCTCAAAATATACCAAATCGTCTACCAAGCTTGCCCTTACATCAAATTCGCCCACTTCACCGCCAACCAAGCAATCTTTGAAGCATTCGAAGCCGAAGAGCGAGTCCACGTCATAGACCTAGACATCCTCCAAGGCTACCAGTGGCCCGCATTCATGCAAGCCCTAGCCGCCCGACCCGGCGGGGCCCCATTTCTTCGAATAACGGGAGTCGGGCCGTCCATCGAGTCCGTGAGGGAAACGGGTCGGTGCTTAACCGAGCTAGCGCACTCTCTCAAAATCCCCTTCGAATTCCACCCCGTCGGTGAGCAACTAGAAGACCTCAAGCCCCACATGTTCAACCGTCGGGTGGGCGAGGCCCTGGCGGTGAACTCCGTGAACCGGCTCCACCGGGTTCCCGGAAACTGCCTCGGAAATATACTAGCAATGATAAGGGACCAAGCCCCCAACATATTCACCCTTGTGGAACAAGAAGCGAGCCATAACGGACCGTACTTCCTGGGCAGATTTCTCGAGGCATTGCACTATTACTCTGCGATTTTCGACTCGTTGGATGCGACGTTTCCGCCGGAGTCGGCACAGAGGGCGAAGGTGGAGCAGTACATATTTGCGCCGGAGATTAGAAACATAGTGGCGTGTGAAGGGGTGGAGAGGATCGAGAGGCACGAGAGGTTGGAGAAATGGAGGAAGATAATGGAAGGGAAAGGGTTCAAGGGAGTCCCACTTAGTCCCAACGCGGTGACTCAGTCGAAAATATTGCTGGGTTTGTATTCGTGTGATGGGTATAGGTTGACAGAGGACAAGGGTTGCTTGCTATTGGGATGGCAAGACAGAGCCCTAATTGCTGCTTCTGCGTGGCGATGCTGA 2103 0.4974 MPPKREKGWDKHFIPLANPKGGEKNKKTNMINSLCGSSLSLKSENSCTNTKLQPTSSNESGLQSRKNATQSSDHLEQTSLTPPSLNLPAFKFDLDGDVQVESPDSSMWESFFSDQLDPDFMISSPVRNMPSPQASTFNCNYNYAQAMQGQSLSGCSPPRFSSQIGAFSSTHKGKGLSPLHRVFNSPNNQYMQTVENLSLPAIEEFLEDYQGDHGLAGGYSSTKLSDIGSSSECFDMSNSIPSILDSLAMANSSRHCGSVNEESSVPGSSQLCQESDVYQMSASLSQALQQERQQEKQQKQQSEQQSQPQPHSLMVPIPIGAEQEQDSGLQLVHLLLACAEAVAKEEYMLARRYLHHLNRVVTPLGDSMQRVASCFTEALSARLAATLTTKLPITNSSNPKPSCSGFPPNSIEILKIYQIVYQACPYIKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGPSIESVRETGRCLTELAHSLKIPFEFHPVGEQLEDLKPHMFNRRVGEALAVNSVNRLHRVPGNCLGNILAMIRDQAPNIFTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPESAQRAKVEQYIFAPEIRNIVACEGVERIERHERLEKWRKIMEGKGFKGVPLSPNAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRALIAASAWRC 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2017 700 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 283 695 IPR005202 -
Dere01g2017 700 MobiDBLite consensus disorder prediction 285 314 - -
Dere01g2017 700 Pfam GRAS domain family 331 699 IPR005202 -
Dere01g2017 700 MobiDBLite consensus disorder prediction 25 82 - -
Dere01g2017 700 MobiDBLite consensus disorder prediction 285 312 - -
Dere01g2017 700 MobiDBLite consensus disorder prediction 1 82 - -
Dere01g2017 700 Coils Coil 281 305 - -
Dere01g2017 700 ProSiteProfiles GRAS family profile. 322 699 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2017 Dere-ChrDere01 34232386 34235745 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2017 218 700 GRAS Transcription Factor Family AT1G66350 38.866 2.05e-100 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dere01g2017 GRAS 3.6e-132 CL0063