Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2012 ATGGCCCAAGACCGTTCAAATTCAGAGAAAGAAGAGGATACTCAAGCAAAGAATCTTGCAACAAATCTTTTCAAGATGCTCCTTAAGTACAGGCCTGAGGATAAAGCTGAAAAGAAAGAGCGCCTTTTGAAGAGGGCACAGGCTGAGGCAGAAGGGAAAACTGTTGAAGCTAAGAAGCCAATCGTTGTGAAATATGGTCTCAATCATGTTACATACCTTATTGAGCAGAATAAAGCACAGCTGGTTGTGATTGCCCATGACGTTGACCCAATTGAACTGGTTATTTGGCTTCCAGCATTGTGCAGGAAGATGGAAATTCCATACTGCATTGTCAAGGGCAAGGCACGATTAGGATCGATTGTCCATAAGAAAACTGCATCAGTTTTGTGCTTGACAACCGTTAAGAATGAAGACAAATTAGAGTTTTCCAAGATATTAGAGGCTATCAAGGCTAACTTCAATGACAAGTATGATGAGTACAGAAAGAAGTGGGGTGGTGGGATTATGGGCTCCAAATCCCAAGCCAGAACTAAGGCCAAGGAAAGGCTACTTGCCAAAGAAGCAGCTCAGAGGATGTCCTAG 582 0.4296 MAQDRSNSEKEEDTQAKNLATNLFKMLLKYRPEDKAEKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVIWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKYDEYRKKWGGGIMGSKSQARTKAKERLLAKEAAQRMS 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2012 193 ProSitePatterns Ribosomal protein L7Ae signature. 101 118 IPR004037 GO:0042254|GO:1990904
Dere01g2012 193 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 50 140 IPR004038 -
Dere01g2012 193 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 18 169 - -
Dere01g2012 193 PRINTS Ribosomal protein L7A family signature 120 144 IPR001921 -
Dere01g2012 193 PRINTS Ribosomal protein L7A family signature 25 38 IPR001921 -
Dere01g2012 193 PRINTS Ribosomal protein L7A family signature 59 79 IPR001921 -
Dere01g2012 193 PRINTS Ribosomal protein L7A family signature 152 172 IPR001921 -
Dere01g2012 193 FunFam 60S ribosomal protein L7a 8 168 - -
Dere01g2012 193 Gene3D - 12 187 IPR029064 -
Dere01g2012 193 PRINTS Ribosomal protein L7A/RS6 family signature 108 122 IPR018492 -
Dere01g2012 193 PRINTS Ribosomal protein L7A/RS6 family signature 63 77 IPR018492 -
Dere01g2012 193 PRINTS Ribosomal protein L7A/RS6 family signature 82 95 IPR018492 -
Dere01g2012 193 PRINTS Ribosomal protein L7A/RS6 family signature 98 108 IPR018492 -
Dere01g2012 193 Coils Coil 36 56 - -
Dere01g2012 193 SUPERFAMILY L30e-like 23 164 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2012 Dere-ChrDere01 34194025 34195820 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2012 14 193 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 87.778 1.08e-117 332