Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2011 ATGTTCTTTACCACGTTACCCACCACTACATTCACATTGCATAGGGGAAAGAAGGAGATGGTCAAAATGTGCAGATGCCATGCATGTTATGCAATAAAAGCAAAAGATGCTAGAAGAACTAAATGGTCCAATGGAATCAAGAAAAGTCTGCAGAGCCGGGCAGTAGCAGCCGGATCAGCAGCCATGGCTCCAAAAAGAGGTGGAAGGACTCCAGCTGTAGCTGCTAAGAAGAAGGCGGATAAGGTGGTGAACCCACTATTCGAGAAGCGTCCGAAGCAGTTTGGGATCGGAGGGGCATTGCCTCCAAAGAGGGACCTAACCAGATTCGTGAAGTGGCCCAAGACCGTTCAGATTCAGAGAAAGAAGAGGATACTGAAGCAAAGGTTAAAGGTCCCACCAGCCTTGAACCAGTTCACCAAAACACTTGACAAGAACCTTGCAACAAGCCTGTTCAAGATGCTCCTTAAGTACAGGCCTGAGGATAAAGCTGAAAAGAAAGAGCGTCTTTTGAAGAGGGCTCAGGCTGAGGCAGAAGGAAAAACTGTCGAAGCTAAGAAGCCAATTGTTGTGAAATACGGTCTTAACCACGTTACATACCTTATTGAGCAGAATAAGGCACAGCTAGTTGTGATTGCCCACGATGTGGACCCTATTGAACTGGTTGTCTGGCTTCCAGCATTGTGCAGGAAGATGGAAATTCCCTACTGCATTGTCAAGGGCAAGGCACGACTGGGATCGATTGTCCATAAGAAAACTGCTTCAGTTTTGTGCTTGACAACTGTTAAGAATGAAGACAAATTAGAGTTCTCCAAGATATTGGAGGCTATCAAGGCCAACTTCAACGACAAGTATGATGAGTACAGAAAGAAATGGGGTGGTGGGATCATGGGGTCCAAATCCCAAGCCAGAACCAAAGCCAAGGAAAGACTCCTTGCCAAGGAAGCAGCGCAGAGGATGTCCTAG 963 0.4673 MFFTTLPTTTFTLHRGKKEMVKMCRCHACYAIKAKDARRTKWSNGIKKSLQSRAVAAGSAAMAPKRGGRTPAVAAKKKADKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKMLLKYRPEDKAEKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKYDEYRKKWGGGIMGSKSQARTKAKERLLAKEAAQRMS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2011 320 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 104 296 - -
Dere01g2011 320 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 177 267 IPR004038 -
Dere01g2011 320 Gene3D - 112 295 IPR029064 -
Dere01g2011 320 PRINTS Ribosomal protein L7A/RS6 family signature 190 204 IPR018492 -
Dere01g2011 320 PRINTS Ribosomal protein L7A/RS6 family signature 209 222 IPR018492 -
Dere01g2011 320 PRINTS Ribosomal protein L7A/RS6 family signature 225 235 IPR018492 -
Dere01g2011 320 PRINTS Ribosomal protein L7A/RS6 family signature 235 249 IPR018492 -
Dere01g2011 320 FunFam 60S ribosomal protein L7a 112 295 - -
Dere01g2011 320 Coils Coil 163 183 - -
Dere01g2011 320 ProSitePatterns Ribosomal protein L7Ae signature. 228 245 IPR004037 GO:0042254|GO:1990904
Dere01g2011 320 PRINTS Ribosomal protein L7A family signature 186 206 IPR001921 -
Dere01g2011 320 PRINTS Ribosomal protein L7A family signature 91 108 IPR001921 -
Dere01g2011 320 PRINTS Ribosomal protein L7A family signature 128 147 IPR001921 -
Dere01g2011 320 PRINTS Ribosomal protein L7A family signature 279 299 IPR001921 -
Dere01g2011 320 PRINTS Ribosomal protein L7A family signature 247 271 IPR001921 -
Dere01g2011 320 PRINTS Ribosomal protein L7A family signature 152 165 IPR001921 -
Dere01g2011 320 PRINTS Ribosomal protein L7A family signature 108 125 IPR001921 -
Dere01g2011 320 SUPERFAMILY L30e-like 150 291 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2011 Dere-ChrDere01 34174850 34178523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2011 62 320 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 84.942 1.22e-166 462