Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1999 ATGGCCAGCTCGCCGACTGGGTTGTCGATGCTTAAACCACCACTCCCAGCTTCTCCTATATCACGATTCAGTTCCAGGTTAAAATTTCCAAAAATTCAACTTCTCAGAGTTAACTGCGATTACTCATGCTTTGAAGTTAGAGACGTTAGCTATCAGCCCCCGGGGACTCAGCTGAGCCTTTTGAAGTCAGTTAATTTTTCTCTTCGTGAGAAAAGTTTTGGCCTAATTTTTGGACAGAGTGGAAGTGGAAAAACAACCCTCTTACAGCTCCTTGCAGGAATAACCAAACCAACTTCTGGATCCATTTACATCCAAAAATATGGGAGTGATGGCAACCCAAGTCAATCTCCCCAGCCCCTCATACCAGAAAGGGTTGGTATTGTCTTGCAGTTCCCTGAGAGGTACTTTGTGGCTGATAATGTGCTCGATGAAGTCACTTTTGGATGGCCAAGACAAAAGAGTGACTATCAATTGAAGGAGCATCTTGCTTTAAGACTTCAAAGGGCAATTAACTGGGTTGGATTAAGTGGGATCTCCTTGGATAAAGATCCTCACTCCCTTAGTGGTGGTTACAAACGTCGCCTAGCCTTGGCAATACAATTGGTTCATATCCCTGACCTCTTGATATTGGATGAGCCTCTTGCCGGTCTTGATTGGAAAGCACGTGCAGATGTTGTGAAGCTTTTGAAGCATCTAAAAAAGGAATTAACAGTGCTAGTTGTAAGCCATGATTTGAGAGAGTTAACAAGTCTAGCCGATAGATCATGGAGGATGGAAATGGGTGGCAATCTTAGGGAGGAGTCACTACCATTTTAA 816 0.4375 MASSPTGLSMLKPPLPASPISRFSSRLKFPKIQLLRVNCDYSCFEVRDVSYQPPGTQLSLLKSVNFSLREKSFGLIFGQSGSGKTTLLQLLAGITKPTSGSIYIQKYGSDGNPSQSPQPLIPERVGIVLQFPERYFVADNVLDEVTFGWPRQKSDYQLKEHLALRLQRAINWVGLSGISLDKDPHSLSGGYKRRLALAIQLVHIPDLLILDEPLAGLDWKARADVVKLLKHLKKELTVLVVSHDLRELTSLADRSWRMEMGGNLREESLPF 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1999 271 Pfam ABC transporter 61 214 IPR003439 GO:0005524
Dere01g1999 271 Gene3D - 36 269 IPR027417 -
Dere01g1999 271 CDD ABC_cobalt_CbiO_domain1 45 261 IPR015856 GO:0005524|GO:0016020|GO:0055085
Dere01g1999 271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 262 IPR027417 -
Dere01g1999 271 FunFam ABC transporter I family member 11 chloroplastic 33 269 - -
Dere01g1999 271 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 44 269 IPR003439 GO:0005524
Dere01g1999 271 SMART AAA_5 70 262 IPR003593 GO:0016887
Dere01g1999 271 PANTHER HEAVY METAL TRANSPORTER 45 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1999 Dere-ChrDere01 34084613 34089733 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1999 45 248 Calmodulin-binding Proteins AT2G36910 24.171 2.01e-08 53.1