Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1994 ATGGACTGGGACTGGAAAGAATTGGCGTGGGATCCATCTGGGTCGGAGCTATCAAACGGAGCAGCTTCAGTGGATTTGAGTCTTGGTGAGACTTCCGATTTGGCCCAAAAATCAGCTGCATATACTCCCAAGGACCACCCAAGAGACTCGAAATCGGTATCGTCATCAGGTGGGTCGTCCAAGAGGAGCCGTACGCAGAATGGATCGACGCAGAGTGTGTCGTGCTTGGTGGATGGATGCGACTCCGACCTGAGTGATTGCAGAGAGTATCATCGGCGACACAGGGTGTGCGAGAAGCACTCCAAAACGCCTATTGTGTTAGTAGGGGGAAAGCAGCAGCGATTCTGCCAGCAATGCAGCAGATTTCATTGTCTGCGGGAGTTTGATGAGGTGAAGAGGAGTTGCAGGAAACGTCTTGATGGACATAATAGGCGCAGAAGGAAGCCTCAGCCGCCTTCTCTTTTCATGGCTGCTGAGAAATTCCTGACCGGTTACAAAGGACCCAGAATCCTGCATTTTGGTAATCCTCAGACATACTCCAACCAATTTATGAGAAGTATGTGGCCTGCCACTGCCAAAGCTGGAGTTGGACCGATGACTTTGAGTTATGACCAACACAGTGTGCTAAGTTCCTTTGCTAATGTCCCGCAACAGCAGGACAAGGAACTTCCTCTCTGGCGGGCAAATGGCCATAAAGCAGGCTATGGCAATGAAGCAGTGTCTGGAATGCCCGTAAGCCAGGCAAATTCTGGTGCCATTGCCCCACCAGCGAGTGGAAACGGTGGCAGGAAGCTCTCTTCTGATTGCAAACCCGGATCTTTTGACTCGAACTGTGCTCTCTATCTTCTGTCAACACTTCAAACACAAAGTCCAGAGTTAAGCTTGGTGCAGTCCACTATAACCTGTCCAATGCAATCATCTCCATTAGGTGATGTGCATTTTGATGCCGGGGACAAGTACTCATGCTCAGAAAGTTCACAAGAAAAGCCTACTGGTCCAGTATTGTTCGAAGATGCAAACTCAACCAACCTTCATTGCAACCAGATGCTGCGGACGAGGCCTGATGGAATGGTGGAAAATGGGGACTTGCCGACCCTTCCATTTTTCTGGGAGTAG 1116 0.5 MDWDWKELAWDPSGSELSNGAASVDLSLGETSDLAQKSAAYTPKDHPRDSKSVSSSGGSSKRSRTQNGSTQSVSCLVDGCDSDLSDCREYHRRHRVCEKHSKTPIVLVGGKQQRFCQQCSRFHCLREFDEVKRSCRKRLDGHNRRRRKPQPPSLFMAAEKFLTGYKGPRILHFGNPQTYSNQFMRSMWPATAKAGVGPMTLSYDQHSVLSSFANVPQQQDKELPLWRANGHKAGYGNEAVSGMPVSQANSGAIAPPASGNGGRKLSSDCKPGSFDSNCALYLLSTLQTQSPELSLVQSTITCPMQSSPLGDVHFDAGDKYSCSESSQEKPTGPVLFEDANSTNLHCNQMLRTRPDGMVENGDLPTLPFFWE 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1994 371 Gene3D - 65 136 IPR036893 GO:0003677|GO:0005634
Dere01g1994 371 MobiDBLite consensus disorder prediction 35 72 - -
Dere01g1994 371 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 18 298 IPR044817 GO:0003677
Dere01g1994 371 SUPERFAMILY SBT domain 73 154 IPR036893 GO:0003677|GO:0005634
Dere01g1994 371 ProSiteProfiles Zinc finger SBP-type profile. 72 149 IPR004333 GO:0003677
Dere01g1994 371 MobiDBLite consensus disorder prediction 52 72 - -
Dere01g1994 371 Pfam SBP domain 75 148 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1994 Dere-ChrDere01 34037122 34038928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1994 68 173 SBP-box Gene Family AT5G50670 66.981 6.00e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dere01g1994 SBP 3.2e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g1994 01 34037122 34038928 Dere01g1994 01 34037122 34038928 ECH