Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1975 ATGGCGGGAGAGGAAAAGCACAAGCAAAGCACATCTCCATGCCCATCTTCTACTGCTACTACTACTTCTTCTTCTCCTTCTCCTTCTCTCCCAGCAAAAACTGATGGCCCGCACCAAAAATGTTGGAGAAAGCAAGTGGACGAGAATCTCCAGAGGCTCCACTCTCTTCTCTTCGGCGCCGATCGTGCCCTTGAGAAACGTGATTTTGAGTCGGCTTATATCCTCGGGCTTCGCCTTATCGGCTTTCTCGACTCCCACTGTCACTCCGAGGTCGATGAAGCCTATATACGTCCCATTCGCCAGGAAGCCTTGGCAAAAATCGACACGGCTCGTCGATCCCTCGTTCCAGACTCTGATCGCCAAGCTTTTGAACAAGCAAAGAGGTCTCCAGGGTGCATTTTTGGCCAAACTGGAGATATTGATATTGAGAAAATGCAGAAGTCGAAATACTTCCAAGTTCTTCTCAAGCAATCGAAAGAAAAGGGTGATTATCTGGGGAAGCAAGGCGAAGCAGGCAGCAAAACGCCAAAAGAATTCGTGCAAACAAAGTTAACATCTACGTATGGGAAAAGTACATTCAGGAACAATAATGGTTCCAAATTTAATTTGAAACATAGCAGATCTGAGGACTGCACGATTGTTGAAATGCCTCAGTCACATTCCAGCCACACGAAGGGTCATCTTATCTCTTCTCCCGTGAAAGCTGAAGGGCAAGAAAGAACTTATGGAACTTTGGGGACAAAACGTGTAAACATGGAACTTATTAGCCCCCGAGTCAGTAACATAAAGTCACCCTCAAGCAACGAGGAAGCTAACCCCGATACCTGTGGTAGTGGGTTTGTTACTGCCAGAGCAAAATTGGAAATGGAAGCAAGGCAGAGGCGTGAAGCGGTTGGTTCACCCAGTGCATCTGTCTCACAATGCGATAACAATTCTGTGAATCGGTCATATGGTGGGAGATCATATGGTGTTTCACGACGTGGCTTCCGTGGTAATTTTGTTCCCCCTATTAAATCCAATGGAACTGGCGTTGGAAGTATGACTTCACGAAATACTGGAAAGTGTGATGATACTTTAGATGACTCTACAAAGAGATGTTTGGAAATGCTATGTGGTCCTGATGGTGAGCTTCCTGAGAAATTGAGGAACTTAGAACCTCGCCTTATTGAACATGTTAGCAATGAGATTATGGATGGAGATCCTAATGTCCGGTGGGATGACATTGCGGGATTGGAGCATGCCAAGAAATGTGTCACTGAGATGGTCATATGGCCTCTGCTACGTCCTGACATATTTAAGGGATGTCGCTCTCCTGGGAAAGGTCTACTTTTATTTGGTCCACCAGGAACTGGTAAAACAATGATAGGAAAAGCCATAGCAGGGGAGGCAAAGGCAACTTTCTTTTACATATCTGCGAGTTCATTGACAAGCAAGTGGATTGGTGAAGGTGAAAAACTAGTAAGAGCCCTTTTTGGAGTTGCCAGTTGTCGGCAGCCAGCAGTAATATTTGTTGATGAAATAGATTCACTCCTATCTCAGCGTAAGTCAGAGGGTGAACATGAATCAAGTAGGAGGCTAAAGACACAGTTTCTCATTGAAATGGAAGGTTTTGACAGTGGCAACGAGCAGATTCTTCTTATAGGGGCCACAAATCGTCCCCAGGAGCTTGATGAAGCAGCACGAAGACGACTTTCCAAAAGACTGTATATCCCCCTGCCGTCCTCAGGTGCTAATTATTATTATTATCGTCTTTTATTTAAACACATTAAGCACCATGTGGCTTACTTATTTGTATTGGCGATGACTGATGAAGAGGCAAGAGCCTGGATTGTACGTAACCTCTTAGAGAAGGACGGACTATTCAAGCTCTCAAAGGAGGAGATTGATACCATATGCAAGTTAACGGAAGGATATTCGGGATCTGACATGAAAAATTTAGTGAAGGATGCTTCTATGGGTCCCCTAAGAGAGGCTTTAAGACAGGGCATAGAAATTACTAAGTTGAAAAAGGAAGATATGCGGCCAGTAACTCTTGAGGACTTTGAGAATGCCCTACAAGAGGTGAGGCCTTCTGTTTCCCCAAATGAACTTGGCACTTACGAAGAGTGGAACAATCAATTTGGAAGCCTATCACTGTAG 2139 0.4479 MAGEEKHKQSTSPCPSSTATTTSSSPSPSLPAKTDGPHQKCWRKQVDENLQRLHSLLFGADRALEKRDFESAYILGLRLIGFLDSHCHSEVDEAYIRPIRQEALAKIDTARRSLVPDSDRQAFEQAKRSPGCIFGQTGDIDIEKMQKSKYFQVLLKQSKEKGDYLGKQGEAGSKTPKEFVQTKLTSTYGKSTFRNNNGSKFNLKHSRSEDCTIVEMPQSHSSHTKGHLISSPVKAEGQERTYGTLGTKRVNMELISPRVSNIKSPSSNEEANPDTCGSGFVTARAKLEMEARQRREAVGSPSASVSQCDNNSVNRSYGGRSYGVSRRGFRGNFVPPIKSNGTGVGSMTSRNTGKCDDTLDDSTKRCLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDGDPNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFKGCRSPGKGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSEGEHESSRRLKTQFLIEMEGFDSGNEQILLIGATNRPQELDEAARRRLSKRLYIPLPSSGANYYYYRLLFKHIKHHVAYLFVLAMTDEEARAWIVRNLLEKDGLFKLSKEEIDTICKLTEGYSGSDMKNLVKDASMGPLREALRQGIEITKLKKEDMRPVTLEDFENALQEVRPSVSPNELGTYEEWNNQFGSLSL 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1975 712 Gene3D - 401 704 IPR027417 -
Dere01g1975 712 Gene3D - 573 688 - -
Dere01g1975 712 Pfam Vps4 C terminal oligomerisation domain 674 708 IPR015415 -
Dere01g1975 712 ProSitePatterns AAA-protein family signature. 544 563 IPR003960 GO:0005524|GO:0016887
Dere01g1975 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 707 IPR027417 -
Dere01g1975 712 MobiDBLite consensus disorder prediction 1 39 - -
Dere01g1975 712 MobiDBLite consensus disorder prediction 9 32 - -
Dere01g1975 712 PANTHER AAA DOMAIN-CONTAINING 239 709 - -
Dere01g1975 712 Pfam ATPase family associated with various cellular activities (AAA) 442 572 IPR003959 GO:0005524|GO:0016887
Dere01g1975 712 SMART AAA_5 438 574 IPR003593 GO:0016887
Dere01g1975 712 FunFam Fidgetin like 1 602 688 - -
Dere01g1975 712 FunFam Fidgetin-like 1 401 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1975 Dere-ChrDere01 33900977 33906416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1975 357 710 Calmodulin-binding Proteins AT3G56690 29.670 4.38e-38 150