Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1968 ATGCCGGAGGAGACGACGTCGATCGACTATGTGATGGAGGCAGCTTCTGGGCCCCACTTCTCTGGCCTACGCCTCGATGGTCTCCTTTCGTCTCCACCTTCTTCATCTGCTTCTTCTCCTGCTCATCATTTCTCTGCTTCTGCTCTTGATTCCTCAACCGTAGCCCCTGATTCTGCTGCCAAACAGCCTTTTGTTATTGGTGTTTCGGGAGGTACTGCTTCCGGTAAGACCACTGTGTGTGACATGATTATCCAACAGCTCCGCGATCACCGCGTTGTGCTTGTCAATCAGGATTCATTTTATCGTGGTTTGACACCTTCAGAATTGGAACGTGTGCACGAGTGCAATTTTGATCATCCCGATGCTTTTGATACCGAGGAGCTGTTAGATTGCATGCAAAAGCTCATAGGCGGCCACTGCGTCCAAGTCCCAATTTATGACTTTAAGAAGCACCAGCGCTCCACCGATAGTTTTCGACAGGTCAATGCTTCTGATGTCATTATATTGGAGGGAATTCTTGTTTTCCATGACCAACGTGTACGTGACCTGATGAACCTGAAAGTCTTTGTTGATACAGATGCGGATGTGAGGCTTGCTCGCAGAATTAGGCGTGATACAGTGGAGAGAGGTAGGGATATAAACTCTGTTCTTGAACAGTATGCAAAATTTGTCAAGCCTGCGTTTGATGATTTTGTACTTCCATCAAAGAAGTATGCCGATGTGATCATTCCACGAGGTGGTGATAATCATGTTGCCATTGATCTGATTGTGCAACATATCCACACAAAACTCGGTCAACATGATCTATGCAAGATATATCCAAATGTATATGTTATTCAGTCTACATTCCAGATCAGAGGGATGCACACATTGATTCGTGACCAAGACATATCAAAGCATGATTTTGTGTTCTACTCAGATAGACTTATACGTCTGGTTGTTGAGCATGGCCTTGGCCATTTGCCATTCACTGAAAAGCAAGTAGTTACTCCAACAGGATCTGTCTATACTGGTGTTGACTTCTGCAAGAAATTGTGTGGAGTTTCTATCATTCGAAGTGGTGAGAGCATGGAAAATGCACTACGTGCATGTTGCAAAGGCATTAAAATTGGAAAAATTCTGATTCACCGGGATGGAGACAATGGAAAACAGCTAATTTATGAGAAGCTGCCCCAGGATATTTCAGAACGTCATGTCTTGCTTCTTGACCCTGTCCTGGCTACAGGTAATTCTGCTAACCAAGCAATTGAGTTACTCATTCAGAAAGGAGTTCCAGAATCCCACATAATATTCCTGAATCTCATATCTGCTCCCGAGGGAATCCATTGTGTCTGTAAAAGGTTTCCATCCTTGAAAATTGTAACATCTGAGATTGATGTTGCAATAAATGAGGAGTTCCGTGTTATCCCCGGAATGGGAGAGTTTGGTGATCGATACTTTGGCACTGATGATTGA 1455 0.4405 MPEETTSIDYVMEAASGPHFSGLRLDGLLSSPPSSSASSPAHHFSASALDSSTVAPDSAAKQPFVIGVSGGTASGKTTVCDMIIQQLRDHRVVLVNQDSFYRGLTPSELERVHECNFDHPDAFDTEELLDCMQKLIGGHCVQVPIYDFKKHQRSTDSFRQVNASDVIILEGILVFHDQRVRDLMNLKVFVDTDADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDQDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPQDISERHVLLLDPVLATGNSANQAIELLIQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVAINEEFRVIPGMGEFGDRYFGTDD 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1968 484 CDD PRTases_typeI 340 455 IPR000836 -
Dere01g1968 484 CDD UMPK 65 263 IPR000764 -
Dere01g1968 484 PRINTS Uridine kinase signature 93 104 - -
Dere01g1968 484 PRINTS Uridine kinase signature 231 244 - -
Dere01g1968 484 PRINTS Uridine kinase signature 138 153 - -
Dere01g1968 484 PRINTS Uridine kinase signature 63 80 - -
Dere01g1968 484 PRINTS Uridine kinase signature 195 205 - -
Dere01g1968 484 PRINTS Uridine kinase signature 209 220 - -
Dere01g1968 484 Pfam Uracil phosphoribosyltransferase 281 482 - -
Dere01g1968 484 Gene3D - 267 482 IPR029057 -
Dere01g1968 484 FunFam Uridine kinase 60 266 - -
Dere01g1968 484 NCBIfam uridine kinase 61 263 IPR000764 -
Dere01g1968 484 FunFam Uridine kinase 267 482 - -
Dere01g1968 484 Gene3D - 59 266 IPR027417 -
Dere01g1968 484 PANTHER URIDINE KINASE 57 393 - -
Dere01g1968 484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 256 IPR027417 -
Dere01g1968 484 Pfam Phosphoribulokinase / Uridine kinase family 65 251 IPR006083 GO:0005524|GO:0016301
Dere01g1968 484 SUPERFAMILY PRTase-like 266 483 IPR029057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1968 Dere-ChrDere01 33850069 33856365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1968 1 484 PRT Gene Family AT5G40870 85.537 0.0 840