Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1961 ATGATCACCAAGCTTCTCCATCTGAGAGCTTTGGTCTTTTTGTTCTGCCTCTTTGTCTCCTCACTTGGAGAAGAGCTGATAAGCTGCGACACAACATCCCCAGAGGCCTCTGGCTACCGTTGCAGTCGAAATGAATTACAGTGTGGAACATTTGCAGTTTTCCGCACTAATTCATTCTACTCATCTCTCTTCAACTTCAGCTTTTACTTGGGAATCGATCGGTATGTGATTGCAGACGCAAATGGGTTTTCTGCAGAAACAGAGTTTCTCTCACAGGAACAACCTCTGCTAATACCAATAGACTGCAAGTGCAAAGGAGGCTTCTTTGGTGCTGAAATAACCAAAACTACCATTAAAGGTGAGAGCTTCTATGGTATTGCTCGATCGCTGGAGGGATTGACAACCTGCAAGGCTATTAGTAATAAGAACCCAGGTGTGTCGCCTTCGGATCTCGATGATAAAACCAGATTGCTGATCCCACTGAGATGTGCATGCCCCTTTTCATCTAGAGTTATTCCAGAGCCAAGGCTTCTGATTTCTTACCCCTTGAATGAAGGCGATACAACTTACACTTTGGCATCAAAGTTTAATACTACTGCAGAAGCAATAATCTTCGCAAACAACATATCCTCGCAAGATTTTAATCCTGATAAGCTCACACCCTTTACCTCTCTTCTGATTCCGCTCAATGGTGAGCCTCTTCTTGGTTCTCTTGCTAAACCCAGAGAACCCAATTCGAGTAATCCATCAATCAGCATCCCAGTAATTAATCCACCACACAAGAAGTCCAAAATGTGGAAGGCTGAATTGTACATTGGGCTAGCTGGGGTTGCAGTTGGACTCTGCATTGCTTTTCTAGCAGCTTTCATTGTGTTCAGATTGAAAAGGGAGAAAAAGAAACGATTAGCCAAAAGAGGCGATTTGGAGCTACAACATCTTAATCTTAGCGTGAGAACCACCAGCGACAAGAAAGTTTCATTCGAGGGATCCCAGGAGGGGAAAATAATCGACACCAATCCTCGTAAGAAGCTGCTCGAAACATACACCATTGAGGACCTCAGAAAAGCAACGGAGGATTTCAGCTCAAGCAATCACATAGAGGGATCCGTATTTCACGGCCGTTTTAAAGGGAAGAACATGGCAATTAAACGAGCAAACACAGCAACGGTGTTAAAAGTCGATCTTGGGCTATTCGATAACACAATCCACCACCACCCCAACATTCTTAGGATGCTCGGAACGTGTTTAACAGAAAGTACCGAATCATATCTGGTTTTCGAGTATGCAGAAAACGGATCTTTGAAAGACTGGCTTCATGGTGGGTTGGCAATAAAGAACGATTTCATATCTTCCTGCTACTGCTTCCTCACATGGAGCCAGAGGCTCAGGATTTGCCTTGACGTGGCCATGGCCCTGCAGTATATGCACCACGTCATGAACCCAAGCTATGTCCATAGACATATAAAGAGCAGGAACATCTTTCTGGATGAAGAATTTGGAGCCAAGATAGGCAATTTTGGGATGGCAGGGTGTGTTGAGAACGACACAGAGGATCCAAATTTCTACTCAACCAACCCTGCCTATTGGAGTCTGGGTTATTTGGCACCAGAATATGTACACCAAGGTGTAATTTCTCCAAGTGTTGATATTTTTGCTTATGGTGTGGTTCTGCTGGAAGTTTTGTCTGGTCAAACACCTATAAGCAGACCCAATGAGAAGGGGGAAGGAAGCATTTGGCTTACAGATAAAATAAAGTCCATTTTGAAGCCTGAGAATGTGGAAGAACTGAGGGAGTGGATGGACCGGGCATTGGGTGAGAATTATTCATTTGATGCAGCAGTGACAGTGGCGAATATTGCTAGAGCTTGTGTGGAGGAAGATTGTTGTATGAGACCAAGTGCAGGGGAAGTTGTGGAGAAGCTGTCGAGATTGGTAGAGGAACTCCCTGCAGAAGAAGACCTCGTGTTGATGAGTGAAAGCTCTTGCAAACCTCTGGTGAAAGCAGGACAGTAG 2013 0.4456 MITKLLHLRALVFLFCLFVSSLGEELISCDTTSPEASGYRCSRNELQCGTFAVFRTNSFYSSLFNFSFYLGIDRYVIADANGFSAETEFLSQEQPLLIPIDCKCKGGFFGAEITKTTIKGESFYGIARSLEGLTTCKAISNKNPGVSPSDLDDKTRLLIPLRCACPFSSRVIPEPRLLISYPLNEGDTTYTLASKFNTTAEAIIFANNISSQDFNPDKLTPFTSLLIPLNGEPLLGSLAKPREPNSSNPSISIPVINPPHKKSKMWKAELYIGLAGVAVGLCIAFLAAFIVFRLKREKKKRLAKRGDLELQHLNLSVRTTSDKKVSFEGSQEGKIIDTNPRKKLLETYTIEDLRKATEDFSSSNHIEGSVFHGRFKGKNMAIKRANTATVLKVDLGLFDNTIHHHPNILRMLGTCLTESTESYLVFEYAENGSLKDWLHGGLAIKNDFISSCYCFLTWSQRLRICLDVAMALQYMHHVMNPSYVHRHIKSRNIFLDEEFGAKIGNFGMAGCVENDTEDPNFYSTNPAYWSLGYLAPEYVHQGVISPSVDIFAYGVVLLEVLSGQTPISRPNEKGEGSIWLTDKIKSILKPENVEELREWMDRALGENYSFDAAVTVANIARACVEEDCCMRPSAGEVVEKLSRLVEELPAEEDLVLMSESSCKPLVKAGQ 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1961 670 ProSiteProfiles Protein kinase domain profile. 299 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1961 670 CDD LysM 185 227 IPR018392 -
Dere01g1961 670 ProSiteProfiles LysM domain profile. 179 227 IPR018392 -
Dere01g1961 670 Pfam LysM domain 185 228 IPR018392 -
Dere01g1961 670 SMART LysM_2 114 160 IPR018392 -
Dere01g1961 670 SMART LysM_2 180 228 IPR018392 -
Dere01g1961 670 FunFam PTI1-like tyrosine-protein kinase 3 429 654 - -
Dere01g1961 670 Gene3D LysM domain 172 233 IPR036779 -
Dere01g1961 670 SUPERFAMILY Protein kinase-like (PK-like) 343 641 IPR011009 -
Dere01g1961 670 Gene3D Transferase(Phosphotransferase) domain 1 429 659 - -
Dere01g1961 670 Pfam Protein kinase domain 377 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1961 670 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 22 648 - -
Dere01g1961 670 Gene3D Phosphorylase Kinase; domain 1 333 428 - -
Dere01g1961 670 ProSiteProfiles LysM domain profile. 113 159 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1961 Dere-ChrDere01 33808492 33810504 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1961 29 667 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 40.533 3.33e-158 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Dere01g1961 Pkinase 9.9e-31 CL0016