Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1959 ATGAGATATTTGTACCTTTGTCTTCCGGTTCTTTCGTGGATTTTGTCTATTCCGAATACCCATGGACTACAAGTTGCTCAGACCCAAGTCTTGTTACAGATTAGAATGTATCTAGAATACCCCGCCTCACTGCAAATTTGGGAAAATTATTATGGTGACCTTTGCAACATTTCTTCATCAGCACATATGAGTATTAGATGCCAGAATAATTCTGTATCTGTGCTTAAAATTATGGGAGATAAAACTACGAAGTTCAACGAGTTCAATGGATTTGCAATTCCCAATCAAACACTGTCGGCGAGCTTCTCTATTGATTCTTTTGTGACCACATTGACGAGGTTGACCGGCTTAAGGGTTCTTAGCTTGGTGTCCTTGGGAATTTGGGGTCCTCTTCCAGACAAGATTCATCGATTATCTATGCTCGAAGTTTTGGACTTGAGCTCAAATTTCTTATTCGGTTCTATCCCTCCCAAAATTTCCACAATGGTAAAGCTTCATACACTTACACTCGATGGCAATCATTTCAATGACACTATGCCCGATTGGTTGGATTCATTATCTCATCTGAATGTCTTGAGTCTGAAAAGCAACAGCTTGAAGGGTTCATTCCCCTCCTCATTATGCAGAATTAAGACGCTCACTGATATTTCCTTGTCTCACAATGAGCTAGCTGGTAAATTGCCTGATTTGAGCGCTCTCACTAGCCTACGTGTACTGAATTTAAGGGAAAACCATTTAGATTCTGAGCTGCCATTGATGCCCATAGAAGTAGTCACAATTCTACTTAGCAATAATTCATTTTCTGGCGAGATACCAAAGCAACTAGGTGAATTGGGTCAGCTTCAACATCTAGATCTTTCGTCAAATCATCTGAGCGGAATACCTCCATCTTCCTTGTTCTCATTGCCAAACATCAGTTATTTAAATTTAGGAAGCAATATGCTGAGTGGGCCACTTCCTGATCAACTAACTTGTGGCAGCAAACTTGGGTTTGTGGATATTTCAAGTAACAAGTTAATTGGTGGACTTACTTCTTGCTTGGCCAATACGTCCGATAGAAGAGTTGTCAAATATGGTGGAAATTGTTTATCTCTTGATTCTCAACATCAGCAGCCAGAGTCTTATTGTGAAGAATTCAGTACGGATAGGAAGAAATTCAGGGCATGGAAAATGACTGTAGTAGGGACCATTATTCTTGGACTTCTTGTTCTTGTGCTTTCGGTGTCTGGAGTTTTCTTCTGTAGAAAATACCAGAGGAGAAAGACATCTGGGCATCATGTGTTGCCAAAGACCGCGCAAGATAATTCCACGACAGGGGTTTCATCTGAACTCCTCGCAAATGCCAGGTTCATTTCTCAGGCAGTGAAGCTAGGGGCACAAGCTACTCCAATCTGTCGATCTATTTCAATTGAAGAGTTGAAGGAAGCCACCAGAAACTTTGACTTGTCAACATTTATTGGTGAAGGCTCCTTAGGGAAGCTGCACAATGGTAAACTGGAGAATGGATCCTACGTGGTGATACGATCTTTGGCTGTGTCAAGAAAATGCTCAATTCAAAATCTTAAAGCTCGGTTAGATTTACTCTCAAAGCTTCACCATCCAAATTTGGTTAGCCTCTTCGGTCATTGTGTTGATGGTGGTGGACAAGATGATTCTACAACTAACAAACTTCATCTTGTCTATGAGTATGTGCCAAATGGGAATTACCATGGCTATCTGTCAGAGTTTTCTCTGGAGAAGCCGTTTAAGTGGTCTGATAGGTTAAAAATTTTAATAGGAGTTGCCAAGGCTGTGCATTTTTTACATACTGGGGTTATTCCCGGCTGTTTTAGTAACCAATTGAAGACGAAGAATATTTTGCTTGATGAGCATCACATTCCCAAACTAAGCGACTATGGAATGTCCATCCTTGGAGAAGAGATCGAAACGCTTGAGGATGATGTTTATAACTTTGGATTCATACTGCTTGAATCACTTGTTGGACCCATAGCAAGCGAGAAAGGCGAAGCGTTTTTTCTAAATGAGAAGGCATCCTTTGGAAGTCAAGATGGTAGAAGAAAAATTGTGGATCCCATAGTGTTGACATCTAGCTCTCATGAGTCATTATCAATCGCGATAGCTATAACAACCAAATGTATATCTCCTGAACCATCGTCTCGCCCCTCATTTGAGGATGTCCTGTGGAACTTGCAGTATGCAGCTCAAGTGCAGGCCACAGCAGATGCAGACCAGAAATCAGAGTCTACGTACTTGATTTGTGACCATATGGAATGTTGTGGCTCACTAGCTAACTGCATCTTGGCCTTGTGCCATTATGATAAAGACTGGCTTGCTTTTAGCGAGCTCAAACTTCAGCTCGCTCAAGAGTCATATACTTACATTGTTGTCAACTTACAAGGAGTATGCGCGGTGTCTTCAGTGTCCAAGTCGAAGATAAATTCTCAAATGCGGGAGGCTTGGCTCGCAAGATTAATTAATAAGTTCATCCGGAGGGGTCTCATCATCTTGGCAGTCATGATTCTAGGCTTGAGAGGAAGGAACAGGAAAAGTGCCTCGGTTCAAATTGATTACCTTGTCCATATACAGGAGATTAAACCTTGGCCCCCAACTCAATCCCTCAGATCCCTTCGTTCTGTTTTAATACAATGGGAAAATGGTGAACGCCGTTCAGGTTCTACCAATCCTGTTGTCCCCTCACTTGGTTCTGTTATAGGTGAAGGGAAAATTGAATTTAACCTGTCATTTAAACTCCCAGTTTCTCTGTTGAGGGATATGTCTGTCAGAGGCGGTGATGCTGATGTATTCCAAAAGAATTGCTTGGAATTCAACTTGTATGAGCCTCGAAGAGATAAGGCTGTTAAAGGTCAGTTGTTGGGAACTGCTGTCATAGATTTGGCGGATTATGGTATACTGAAAGAGACACAGAGCATTAGTGCTCCAATGAACTGCAAGAGAAACTATAGAAACACAGATCAGCCACTATTGTTCCTTAAAATTCAGCCTGTTGAAAAGGATCGCGCTAGATCCTCTTTGAGGGACAGGTTGTCGAAAGAGGTGTCGAAGGAAAATAGTGTTGGTGACTCTGTTTCAGCATTGATGAATGAAGAATATGCTGATGAAGCTGAGATTGCCTCTTTTACAGATGACGATATTTCCTCACCTTCGTCTGTGGCTGCAGTTACTTCTGCCTTGGAGTCCCATGGGTATATACCTCCTGAACTTGAAAAGAATGGATCAACTCAAAACACCGATAAGAATGAAAAGGAGCATCCACTAGCTTTGGAAAGAAGGCTTGAAAAATCCAGTATGGTACCACAAGACACAAATGAGAAGTTAGGGAGCAGTTCATCATGCACATCGTCAATGGATGTATCATCTGACCTTGGGAGTCCCCTAAATGGTCACGCTTCTATTAACTCTCCTGTTCATAGTTCAGTGACAACCCGAAAGCATGCTGTTTCCTCATTTGCTCAATATTCTTCCCCATCATTACTGTTCAAAAATTTAGATGAAGATTCTAAGACCAAGACTGACAGCAGTGATCATGAACATTTGGATCAGGAGGTTCAAATCAAGGTTGATACTAGTAGAACTATAGTTACTGATATTCAATTAAACAGCAATGAATGTGCTTCCAACAGTTATTCAAGCAAGGTAGCATCTCTGGATAATAATACCTTCATGGGCAAGAATCTTGGCACTGTAAACATTGATGGTTCTGAAATTATTGACAAATTTCATGGGGGATATGAGGAAGCTGAAAAATATCATGTGGAGGGAGTAAGTGATCAATTTTCCCGTAGTTCTGTTGAGGATAAACATGGAAATGAAAACTCCAATTTGTATAACCATGCAGAAGATGAACAATCTGTAGTTGAAGGTGTCAAAGATCAAGTCTTATTGAGTAGAAGTGCACATCCTTCAGTTGGGACAAAAATTGGCATGAAGGGCAATATTATGAAAAGTGAAAGATTAAAGCATGTGAAATCTGTAAGATCACCAATAGACTTAACATGGAGTGCTGGATCACTTGGTAGTAATCATCATGCAGAAGTAAAGGATATTGACTTTGCTGGAGGTGCACAAAATGGTGGAGGGAATATCAGAGGCAGTGAGAAAAAAGATACAAAGGTTTATTCGAAGGAAGCAACAAGTTCCATATCAGACACCAAAATCTGTCTTTTGGAAAACAAGATGAAGATGCTTGAAGGAGAGTTAAGAGAAGCTGCAGCTATTGAGGCTGCTCTATATTCAGTAGTTGCTGAGCATGGAAGCTCCATAAGTAAGATCTATGCTCCAGCTCGGCGCCTTTCTAGGTTGTATCTTCATGCTTGTAAAGAAAATCTTCGAGCAAGAAGGGCTGGGGCAGCTAAAAGTGCTGTTTCCGGGCTAGTACTTGTTGCAAAGGCATGTGGAAATGATGTCCCAAGGTTGACATTTTGGTTGTCTAATTCTATTGTGTTGAGAACAATTTTATGTCAAATTACCAAAGAAGTGAAGTCATCAGATTCTGCTGGACCTAGTATGAAAAGGAAAAGTGAGGGAGAGGGGAATAACAAGATATCACCCTCATTACGGTGGAAGGGATCTTCTCCCGGAAGAAATGAAAACCCCACAAATGAGCATGGAGATTTTGGTAACTGGGATGACCCCCATGTATACACTTCAGCACTGGAAAAGATAGAAGCCTGGATCTTCTCTCGCATTGTGGAATCTATCTGGTGGCTGACTCTGACTCCACATATGCATCCTGTTGATGCAAAGTTCGCTGAAAAGTATGTGGGTTCTGCCTCAAGGAAAACCTATGGAAGGTTGTCTAGCTCAAGTGGTCAAGAACAGGGGAAGTTTTCACATGATATTTGGAAGAACGCTTTTAAGGAAGCCTGGGAAAAGCTTTGTCCCATTCGAGCTGGAGGGCATGAGTGTGGTTGTTTACCAGTGCTGTCTAGATTGATAATGGAGCAATGTGTGGCAAGATTAGATATGGCTATGTTTAATGCTATTCTTCGTGAATCTGCTGATGAAATCCCAACAGATCCCGTATCAGATCCCATTAGTGATCCCAAGGTTCTCCCCATTCCCCCTCGAAAATCAAGCTTTGGAGCTGGTGCACAGCTAAAAACTGCGATTGGAAACTGGTCTAGATGGCTGACTTACCTATTTGGTATTGATGATGATGACTCACTTCAATACAATGATGACCCTGAATCTGCTAATAATGATGGGAGAAAAAGTACATCTTTCAAGTCCTTTCATCTTCTTAATGCACTCAGTGAGCTCCTGATGCTTCCTAAGGATATGTTGCTGGGTACATCTGTCAGGAAAGAGGTATGCCCAATGTTTAGTGCACCACTAATTAAGAAAATTCTAGAGAATTTCGCCCCAGATGAGTTTTGCCCTGATCCAATTCCAACTGTGGTTTTTGAAGCTCTGGATTCAGAGGATGATCTTGACGATGGTAAGGAGTCTGTCAAAACCTTCCCATGCATTGCCGCTCCCATTGTCTATATACCTCCCCCTCCATCTTCTATTGCAAGCATAATTGGAGAGGTTGGAAGCAAGTCTAAGTTGAGAAGAAGTAGATCTTCTGCTATGCGAAAGGCATATGCCAGTGATGATGAGCTCGATGAATTAAACTTCCCTTTATCTTTGATATCTGATGATGGTATCATCTCCGCATCTCATTCAACAAAACCCATCTGGAAGTCAAAAGAAATTCACAGTGCATCTGCTGTCAGATATAAGCTCCTCAAGGATGTATGGATGAACAGCGAGTAG 5778 0.415 MRYLYLCLPVLSWILSIPNTHGLQVAQTQVLLQIRMYLEYPASLQIWENYYGDLCNISSSAHMSIRCQNNSVSVLKIMGDKTTKFNEFNGFAIPNQTLSASFSIDSFVTTLTRLTGLRVLSLVSLGIWGPLPDKIHRLSMLEVLDLSSNFLFGSIPPKISTMVKLHTLTLDGNHFNDTMPDWLDSLSHLNVLSLKSNSLKGSFPSSLCRIKTLTDISLSHNELAGKLPDLSALTSLRVLNLRENHLDSELPLMPIEVVTILLSNNSFSGEIPKQLGELGQLQHLDLSSNHLSGIPPSSLFSLPNISYLNLGSNMLSGPLPDQLTCGSKLGFVDISSNKLIGGLTSCLANTSDRRVVKYGGNCLSLDSQHQQPESYCEEFSTDRKKFRAWKMTVVGTIILGLLVLVLSVSGVFFCRKYQRRKTSGHHVLPKTAQDNSTTGVSSELLANARFISQAVKLGAQATPICRSISIEELKEATRNFDLSTFIGEGSLGKLHNGKLENGSYVVIRSLAVSRKCSIQNLKARLDLLSKLHHPNLVSLFGHCVDGGGQDDSTTNKLHLVYEYVPNGNYHGYLSEFSLEKPFKWSDRLKILIGVAKAVHFLHTGVIPGCFSNQLKTKNILLDEHHIPKLSDYGMSILGEEIETLEDDVYNFGFILLESLVGPIASEKGEAFFLNEKASFGSQDGRRKIVDPIVLTSSSHESLSIAIAITTKCISPEPSSRPSFEDVLWNLQYAAQVQATADADQKSESTYLICDHMECCGSLANCILALCHYDKDWLAFSELKLQLAQESYTYIVVNLQGVCAVSSVSKSKINSQMREAWLARLINKFIRRGLIILAVMILGLRGRNRKSASVQIDYLVHIQEIKPWPPTQSLRSLRSVLIQWENGERRSGSTNPVVPSLGSVIGEGKIEFNLSFKLPVSLLRDMSVRGGDADVFQKNCLEFNLYEPRRDKAVKGQLLGTAVIDLADYGILKETQSISAPMNCKRNYRNTDQPLLFLKIQPVEKDRARSSLRDRLSKEVSKENSVGDSVSALMNEEYADEAEIASFTDDDISSPSSVAAVTSALESHGYIPPELEKNGSTQNTDKNEKEHPLALERRLEKSSMVPQDTNEKLGSSSSCTSSMDVSSDLGSPLNGHASINSPVHSSVTTRKHAVSSFAQYSSPSLLFKNLDEDSKTKTDSSDHEHLDQEVQIKVDTSRTIVTDIQLNSNECASNSYSSKVASLDNNTFMGKNLGTVNIDGSEIIDKFHGGYEEAEKYHVEGVSDQFSRSSVEDKHGNENSNLYNHAEDEQSVVEGVKDQVLLSRSAHPSVGTKIGMKGNIMKSERLKHVKSVRSPIDLTWSAGSLGSNHHAEVKDIDFAGGAQNGGGNIRGSEKKDTKVYSKEATSSISDTKICLLENKMKMLEGELREAAAIEAALYSVVAEHGSSISKIYAPARRLSRLYLHACKENLRARRAGAAKSAVSGLVLVAKACGNDVPRLTFWLSNSIVLRTILCQITKEVKSSDSAGPSMKRKSEGEGNNKISPSLRWKGSSPGRNENPTNEHGDFGNWDDPHVYTSALEKIEAWIFSRIVESIWWLTLTPHMHPVDAKFAEKYVGSASRKTYGRLSSSSGQEQGKFSHDIWKNAFKEAWEKLCPIRAGGHECGCLPVLSRLIMEQCVARLDMAMFNAILRESADEIPTDPVSDPISDPKVLPIPPRKSSFGAGAQLKTAIGNWSRWLTYLFGIDDDDSLQYNDDPESANNDGRKSTSFKSFHLLNALSELLMLPKDMLLGTSVRKEVCPMFSAPLIKKILENFAPDEFCPDPIPTVVFEALDSEDDLDDGKESVKTFPCIAAPIVYIPPPPSSIASIIGEVGSKSKLRRSRSSAMRKAYASDDELDELNFPLSLISDDGIISASHSTKPIWKSKEIHSASAVRYKLLKDVWMNSE 1925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1959 1925 Gene3D Ribonuclease Inhibitor 258 370 IPR032675 -
Dere01g1959 1925 MobiDBLite consensus disorder prediction 1518 1542 - -
Dere01g1959 1925 SMART LRR_typ_2 186 210 IPR003591 -
Dere01g1959 1925 SMART LRR_typ_2 302 326 IPR003591 -
Dere01g1959 1925 SMART LRR_typ_2 138 162 IPR003591 -
Dere01g1959 1925 SMART LRR_typ_2 278 301 IPR003591 -
Dere01g1959 1925 SMART LRR_typ_2 233 254 IPR003591 -
Dere01g1959 1925 MobiDBLite consensus disorder prediction 1502 1546 - -
Dere01g1959 1925 Gene3D Ribonuclease Inhibitor 25 257 IPR032675 -
Dere01g1959 1925 ProSiteProfiles C2 NT-type domain profile. 845 1003 IPR019448 -
Dere01g1959 1925 MobiDBLite consensus disorder prediction 1007 1027 - -
Dere01g1959 1925 MobiDBLite consensus disorder prediction 1068 1143 - -
Dere01g1959 1925 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP205 1381 1922 IPR021827 GO:0005643
Dere01g1959 1925 Gene3D Transferase(Phosphotransferase) domain 1 564 643 - -
Dere01g1959 1925 Gene3D Transferase(Phosphotransferase) domain 1 644 758 - -
Dere01g1959 1925 Pfam Leucine rich repeat 164 223 IPR001611 GO:0005515
Dere01g1959 1925 Pfam Leucine rich repeat 262 315 IPR001611 GO:0005515
Dere01g1959 1925 MobiDBLite consensus disorder prediction 1007 1021 - -
Dere01g1959 1925 ProSiteProfiles Protein kinase domain profile. 480 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1959 1925 MobiDBLite consensus disorder prediction 1080 1104 - -
Dere01g1959 1925 SUPERFAMILY L domain-like 105 364 - -
Dere01g1959 1925 Pfam Protein tyrosine and serine/threonine kinase 483 638 IPR001245 GO:0004672|GO:0006468
Dere01g1959 1925 Gene3D Phosphorylase Kinase; domain 1 444 563 - -
Dere01g1959 1925 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 443 563 - -
Dere01g1959 1925 ProSiteProfiles Leucine-rich repeat profile. 280 301 IPR001611 GO:0005515
Dere01g1959 1925 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 24 255 - -
Dere01g1959 1925 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 257 381 - -
Dere01g1959 1925 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 849 978 IPR019448 -
Dere01g1959 1925 MobiDBLite consensus disorder prediction 1105 1143 - -
Dere01g1959 1925 SUPERFAMILY Protein kinase-like (PK-like) 463 730 IPR011009 -
Dere01g1959 1925 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 564 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1959 Dere-ChrDere01 33776526 33790924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1959 6 754 Miscellaneous Gene Families AT5G14210 53.687 0.0 783
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Dere01g1959 PK_Tyr_Ser-Thr 7e-17 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g1959 01 33776526 33790924 Dere02g1847 02 18232453 18238408 CCT
Dere01g1959 01 33776526 33790924 Dere01g1959 01 33776526 33790924 ECH