Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1957 ATGCTAGTACTTCTCGAGGCAATCTTTGTTGTTGGGATTATTAGTTTTTGTGACCCTCCTGTGAAGATGAGATCTGTGCGAACTGAGATTGAGATGGCTGGAGGTGTCATTCAACAGTTATTGAGGAGGAAACTCCAGTCTCAATCATCTACCTCTTCCTTTTTGTCATCCATCATCACAAGGAGAGATGATGCTGGCTCTACTGGCAGCAGGTCCTTGAGAGCATTTGCATTAATTGGTGCTGGTGTCTCAGGATTTTTGAGTTTTGTGACAACAGCTTCAGCAGATGAGGCTGAGCATGGCCTGGAATGTCCAAGCTATCCATGGCCTCACAAGGGCATCCTCAGTTCATATGATCATGCTTCGATTCGTCGTGGTCATCAAGTTTATACACAAGTCTGTGCTTCCTGCCATTCTATGTCTTTGGTATCATACCGTGATTTGGTTGGTGTTGCTTATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGACGTTTACACGCCCTGGTAAACTCAGCGATCGCTTCCCTCAGCCATATGCAAATGAAGCAGCTGCTAGGTTTGCTAATGGAGGAGCTTATCCTCCAGATCTTAGTCTTATAACCAAAGCTCGCCACAATGGTCAAAACTATGTATTTGCCCTTCTTACTGGTTATCGTGATCCCCCTGCTGGTGTTTCGATTAGAGAGGGATTACACTACAATCCTTATTTTCCTGGTGGAGCAATTGCCATGCCTAAAATGCTTAATGATGGTGCTGTTGAATATGAAGATGGTACCCCTGCCACAGAATCTCAGATGGGAAAAGACGTCGTCTCATTCCTAGCCTGGGCTGCTGAACCTGAGATGGAAGAGAGAAAACTGATGGGCTTCAAATGGATTTTTGTACTATCACTGGCACTGCTTCAAGCTGCCTATTTCCGTCGACTGAGGTGGTCAGTTCTAAAGTCTCGCAAGCTGGTTGTTGATGTTGTCAACTAG 1017 0.4543 MLVLLEAIFVVGIISFCDPPVKMRSVRTEIEMAGGVIQQLLRRKLQSQSSTSSFLSSIITRRDDAGSTGSRSLRAFALIGAGVSGFLSFVTTASADEAEHGLECPSYPWPHKGILSSYDHASIRRGHQVYTQVCASCHSMSLVSYRDLVGVAYTEEEVKAMAAEIEVVDGPNDEGETFTRPGKLSDRFPQPYANEAAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATESQMGKDVVSFLAWAAEPEMEERKLMGFKWIFVLSLALLQAAYFRRLRWSVLKSRKLVVDVVN 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1957 338 FunFam Cytochrome c1, heme protein, mitochondrial 294 338 - -
Dere01g1957 338 Pfam Cytochrome C1 family 109 325 IPR002326 GO:0009055|GO:0020037
Dere01g1957 338 FunFam Cytochrome c1, heme protein 98 293 - -
Dere01g1957 338 PRINTS Cytochrome C1 signature 107 126 IPR002326 GO:0009055|GO:0020037
Dere01g1957 338 PRINTS Cytochrome C1 signature 127 146 IPR002326 GO:0009055|GO:0020037
Dere01g1957 338 PRINTS Cytochrome C1 signature 243 254 IPR002326 GO:0009055|GO:0020037
Dere01g1957 338 PRINTS Cytochrome C1 signature 254 273 IPR002326 GO:0009055|GO:0020037
Dere01g1957 338 PRINTS Cytochrome C1 signature 172 192 IPR002326 GO:0009055|GO:0020037
Dere01g1957 338 PRINTS Cytochrome C1 signature 293 308 IPR002326 GO:0009055|GO:0020037
Dere01g1957 338 PRINTS Cytochrome C1 signature 205 229 IPR002326 GO:0009055|GO:0020037
Dere01g1957 338 PRINTS Cytochrome C1 signature 274 293 IPR002326 GO:0009055|GO:0020037
Dere01g1957 338 PANTHER CYTOCHROME C1 65 335 IPR002326 GO:0009055|GO:0020037
Dere01g1957 338 SUPERFAMILY Cytochrome c 102 292 IPR036909 GO:0009055|GO:0020037
Dere01g1957 338 Gene3D - 98 293 IPR036909 GO:0009055|GO:0020037
Dere01g1957 338 Gene3D - 294 337 - -
Dere01g1957 338 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 293 337 IPR021157 -
Dere01g1957 338 ProSiteProfiles Cytochrome c family profile. 121 228 IPR009056 GO:0009055|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1957 Dere-ChrDere01 33757329 33761239 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1957 32 338 Chloroplast and Mitochondria Gene Families AT3G27240 84.790 0.0 504