Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1930 ATGGTGAGGGAAGAACAAAATCGCAGCCCGCAGAACCAAAAGAACCCATCAAGAGAAACAAACACATTGCAAAATGGCGAAAACTTGGGCAGTATTTTCAGCCCTAGATTCAAATCTGTTGCTGCTATGGCTGGTTGGGATGAAGAGGCCCTCCTATTCGCCAGCCTCGTCGTTGAAGACACGCCGGAGAGAGACTTCAAGCACAAGAGACGCTCTGATCTAGACTTCAAGACTCCGCCCACCAATTCAAGAAGGAAACGCAGAGCTCAGAGGAGTCCATGCTCGATCCCTGTGGCCGTTCTTGACCTTGAGGAAGAAGAAACTCCCAGAAAGGATAGTGGGAAAAAGAAGAAAGAAAACAAAACTAGTGCTAAAAAAGACAGTAAAGGAGGAGGGGATATATTGACCCAGCAGACCTCTGGTTCTTCTTCTTCTTCGAGTTCTGCTCTTCCCTGCATTGATAAACTGAGGGAGGAGCTTTCCTGCGCGATTTGTTTGGAGATATGCTTTGAACCGAGTACCACTCCTTGTGGTCACAGCTTTTGTAGAAAATGCCTAAAATCTGCCGCTGATAAATGCGGCAGAAGGTGCCCAAAGTGTAGACAATTGATAAGTAATGGACGATCCTGCACCGTGAACACAGTTCTTTGGAATACAATACAGCTCCTTTTTCCCAAAGAAGTTGAAGCAAGGAAAACAGCAGGTGCCTTGAATAATCGAGAAGCTCAACAACGCTTGAGTCCAGAAACAGCATTCTATAGTAATCTAAGGAATCGAAGCACACAAACAATCAGAGCATCGAGCAGAGGTACAACGAGTTCGAGGAGAAGAGGGATCACATCAACCCAAGATGAGAATGCGGATGCTGCATTGGCTAGAAGGTTGCAGAGAGAGAATGTAGAGAATAATTCAAGGAATCAAACCCCATCATCGTCTTCGAGAGGGAGGACAAGAAGAGGGATTACGAGCCAAGATGAGGATGCTGCTTTGGCTCTAAGGTTGCAGAGAGAAGAGTTTATGGAGGCTTTTAGGGGAAGCCAAGGACAGTCCAGCAGAAATGTGTCTTTAGCCAGAGCAAATTTGAGGGCCATGGCATCTAGAGCCATCAATCTTCGAATTAGAGACAGAAGATTTTAA 1137 0.4591 MVREEQNRSPQNQKNPSRETNTLQNGENLGSIFSPRFKSVAAMAGWDEEALLFASLVVEDTPERDFKHKRRSDLDFKTPPTNSRRKRRAQRSPCSIPVAVLDLEEEETPRKDSGKKKKENKTSAKKDSKGGGDILTQQTSGSSSSSSSALPCIDKLREELSCAICLEICFEPSTTPCGHSFCRKCLKSAADKCGRRCPKCRQLISNGRSCTVNTVLWNTIQLLFPKEVEARKTAGALNNREAQQRLSPETAFYSNLRNRSTQTIRASSRGTTSSRRRGITSTQDENADAALARRLQRENVENNSRNQTPSSSSRGRTRRGITSQDEDAALALRLQREEFMEAFRGSQGQSSRNVSLARANLRAMASRAINLRIRDRRF 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1930 378 MobiDBLite consensus disorder prediction 62 148 - -
Dere01g1930 378 Pfam Zinc finger, C3HC4 type (RING finger) 162 200 IPR018957 GO:0046872
Dere01g1930 378 PANTHER UNCHARACTERIZED 300 370 - -
Dere01g1930 378 MobiDBLite consensus disorder prediction 103 128 - -
Dere01g1930 378 MobiDBLite consensus disorder prediction 301 318 - -
Dere01g1930 378 SMART ring_2 162 200 IPR001841 -
Dere01g1930 378 ProSiteProfiles Zinc finger RING-type profile. 162 201 IPR001841 -
Dere01g1930 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 231 IPR013083 -
Dere01g1930 378 MobiDBLite consensus disorder prediction 1 31 - -
Dere01g1930 378 SUPERFAMILY RING/U-box 154 225 - -
Dere01g1930 378 MobiDBLite consensus disorder prediction 132 148 - -
Dere01g1930 378 ProSitePatterns Zinc finger RING-type signature. 177 186 IPR017907 -
Dere01g1930 378 MobiDBLite consensus disorder prediction 62 82 - -
Dere01g1930 378 MobiDBLite consensus disorder prediction 257 324 - -
Dere01g1930 378 MobiDBLite consensus disorder prediction 257 287 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1930 154 268 C2H2 Transcription Factor Family AT5G39550 30.508 2.61e-06 47.4