LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere01g1928	ATGGGAAGACAGCCTTGTTGTGACAAGGTTGGTTTGAAGAGAGGTCCTTGGACTATTGAGGAAGATCACAAACTCATGAACTTCATCCTCAACAATGGCATCCATTGTTGGCGTATGGTTCCCAAGCTTGCAGGTCTGCTAAGATGTGGAAAGAGCTGCAGATTGAGGTGGATTAATTATCTGAGGCCAGACCTCAAGCGAGGTGGCTTCACCGAAATGGAAGAGGATCAAATTATTCAGCTACATTCACGTCTTGGCAACAGGTGGTCTAAGATTGCTGCACATTTTCCTGGGAGGACGGACAATGAGATCAAGAACCATTGGAACACAAGAATCAAGAAGAGGTTGAAGCTGCTTGGTCTGGATCCTGTGACACACATGCCAATTGAGCCAAAGGAACTCACTGATGATAAAAGGCAGAGAAACCAATTACAGCCAAGTTCTTCCTCCAAAGGGTCTGAAGAAAACGTGGGAAAGAAGTCCTCGGACAATGATGGCTGCACAGAAGAAGCTTCAATACCACAAGGGGAAAGGGAAGAAAACAAGGTGACCTGGGACGACACCACTGATCTTATAAACAAAAACAAAATGATATGCTCAGCCTTGGACTTTGGATCATGGATGAGCCAAGAAACCAACACCAGTACTAGCTCATTCAGTAGTTCATCTTTCTCACTTGATGATTCTTGCCACTTTTCTATGGGTGAATCCCCTTACCTGCAGGAAAATTCCTTACTGCAATGGGTTGATAGTATTAATATGGATTCCATTCTCGCATGGGATGGCTTCAATCCTCTCGAACAGGATCTTTTCTTCTTGGAAAATAGACAATGA	834	0.4412	MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSRLGNRWSKIAAHFPGRTDNEIKNHWNTRIKKRLKLLGLDPVTHMPIEPKELTDDKRQRNQLQPSSSSKGSEENVGKKSSDNDGCTEEASIPQGEREENKVTWDDTTDLINKNKMICSALDFGSWMSQETNTSTSSFSSSSFSLDDSCHFSMGESPYLQENSLLQWVDSINMDSILAWDGFNPLEQDLFFLENRQ	277

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere01g1928	277	CDD	SANT	16	61	IPR001005	-
	Dere01g1928	277	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Dere01g1928	277	PANTHER	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	1	223	-	-
	Dere01g1928	277	SMART	sant	66	114	IPR001005	-
	Dere01g1928	277	SMART	sant	13	63	IPR001005	-
	Dere01g1928	277	MobiDBLite	consensus disorder prediction	141	155	-	-
	Dere01g1928	277	Gene3D	-	11	67	-	-
	Dere01g1928	277	CDD	SANT	70	110	IPR001005	-
	Dere01g1928	277	Gene3D	-	69	163	-	-
	Dere01g1928	277	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Dere01g1928	277	FunFam	MYB transcription factor	68	129	-	-
	Dere01g1928	277	FunFam	MYB transcription factor	11	67	-	-
	Dere01g1928	277	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Dere01g1928	277	Pfam	Myb-like DNA-binding domain	67	110	IPR001005	-
	Dere01g1928	277	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Dere01g1928	277	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Dere01g1928	277	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Dere01g1928	277	MobiDBLite	consensus disorder prediction	127	185	-	-
	Dere01g1928	277	MobiDBLite	consensus disorder prediction	156	185	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere01g1928	Dere-ChrDere01	33467099	33468147	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere01g1928	1	143	MYB Transcription Factor Family	AT5G16600	70.629	3.22e-74	228

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Dere01g1928		Myb_DNA-binding	5.9e-11	CL0123