Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1925 ATGAAATGGTTCAATCAAAAGACGCGACTTCCCATATATCACTGGAACCGAACTGCTCAGAAAGCCCTAAAATTCTACGGTTCTTCCGATTGCTGTGCCCTACTCTTTGTAATATCCCAGCATACACCATTATCTGAATCGATCTACTCCCTTCGATTTACGCACCATCCCCACATCTTCCGTAGTGCCGTAGCAGTGGATTTCGCCCCTTCCCTCCTCTCTTCTCTCTGTCTTCATCAGAGGTACCAATTGAAATTCTGTGCCTGTCATGGTTTATTCTCTTCCTCGAGCTCTCCAGCTTTTGTTTCTCTTAAGTCCATGGAGGGTATAGAGCCTGATTTGAAAAATCATCCACCGGAAGATGATGTGCTAAATGAAGGTCAAACATCACCCGGAGTAGTGAGTGATGTTGGGCAGGAGAGTCAAAGCCCCAAGGCTTCCTCCATTGCTGATAGTGACATGGTCATTGATGGCGAGCATGACTGTACAAGCCTGAATAATTGTTCTGTTGACCAAAGTCAGATGGAAATTAATGATGATTGTCAGAATTCAAAGATGTCCTCTGACAACAAATTTCAGATTGATGCTGCCAATGGACAGCTGTCTCAGAGTTCCATCATTTCCTCTGTTGATGTATCGATTAATAGCAGTGCCATAAAAGCTGAGGAGCGTCTGTACGTGGTACCAAAAATTGGCATGGAGTTTGAATCAGAAGACCATGCTTACAAGTGTTACAGCAGGTATGCTGTTATGCAAGGTTTCAGCATACGAAAAGATTTTGTCAACAAAAGTAGGGTGAATGGTGCAGTGGTATCTAGAAGATACACTTGCTATAGACAGGGTTATCGGCCTAACAAAAATAATACCAACCTGAAGAAATCCCAGCCAGAAACAAGGACTGGCTGCCTGGCACATATGACTATTGCTCGTCAGCCTAATGGCAAGTTTCGTGTCACTCATTTTGAAACAGAGCACAATCATGAGTTTGTTACGCCCTGTACAGCTCATATGTTACCATCTGTGAAAAGATTGAGTTTTGCTCATGCAGTTGAATCTAATGTGGCTAATGATTCTGGGTTGGATGGGGTACCCAAACTTGGAATGGGATTTGACTCAGAAGATCATGCATATGAATTTTATAATACATATGCCAGATGTGTAGGTTTCAGTGTTCGGAAAGATTATGTAAACAGGAGTAAAATTGATGGTGCTGTAGCATCTAGAAGGTTTACATGCTTTAGAGAAGGTTTTCGGCAGAAAGACAAACGTGATTTGAATGTAAAGAGGCCTCGTAAGGAAACTAGAATTGGATGTTTAGCACAACTAGTAATTTCTCGCCAACCTGATAGTAGATATCGTGTAACTCACTTTGAAGAAAAGCATAATCATGAGCTTGTTGCTGCATGTAGAGTTCACATGTTACGATCACAGAAGAGAATAGCCACAGCTCAAGCCATTGAAAGCAACATGGTAGATGGTTCCAGGGTGCTTCCTAAGCCAGCCTCTGAATCAAATTGCAAGGCTATTGAAGGTTCTGATGATCAGGGTTATGATCCCATAGATTATGAAAATAAATTGCCTTTCAAGCGATCGGGAGAAATGAAAGAGGGAGAAATTGAAAAGATGAAGCAACATTTTCAAAGCAAGCGATCCAAAAATCCTTCTTTCTTTTATGCTTTCCAGCTTGATTCTGATGATCAGATAACTAATATATTTTGGGCCGACACAAAGATGGTAGCAGACTACAGTGATTTTGGTGATGTTGTTTGCTTTGATTGTAGTTACAGATTTTGTAGAGATTCTCGCCCCTTTGCTCCATTTCTTGGTGTCAATAATCACAAGCAAATGGTTATCTTTGGGGCTACCCTTCTATATGATGAAACCATTGAATCTTTCAAGTGGTTGTTTCATGTTTTCTTGGAGGCAATGTCCATGAGAAAGCCAAAGACAGTTCTTATAGATCAAGATGATATAATAGCTGAAGCAATCTCTTCTGTATGGCATGAAACAAACTGCCAAATCTGTGTATGGCACTTATACCAAAATGCACTGAAGCAACTCAGTCACGTGTGTGTGGGATCTGGTTCTTTTGTTAATGATTTGAGCAGCTGTTTTTTTGATCATGAGGAGGAGGAAGATTTTGTTAATGCATGGAATGCTTTGCTGGACAGATATAATCTTTGGGAAAATGAATGTTTGCGTCGAATATATGAAAGCAGAGATAAATGGGCCGTAGCATATCGAAAGCAAATTTTCTGTGCTGACATAACTAGTGTGCTGCGGAGAGAAAATCTTTCTGGCAGCTTGAAGAGGTACCTAAAGAGTGATTCAGATGTGCTATCATTTCTCAAGCATCTTGGGAAGGTGGTGACTGATTGGCACTATAAGGAATTAGAAGCCAATTATAATATGAGCCAGCGTATGCCAGCACTGATGGGAGATGTGATTCTTTTAAAGCATGTGAGAGATCCATATACGCCAAAGATATTCGAGTTATTTCAGAAAGAATACGAAACATGCTTAAATCTTGTGATAAAGCATTTCAGTGAGAGTGGATCATTGTACAGATATAAAGTTAGCTTATACGAACACGAACGAGAGTATACAGTTACCTTCGATTCATCTAATGAGACTGTCACTTGCAGCTGTATGAAATTTGAGTCTATAGGAGTGTTATGCAGCCATGCATTGAAAGTTCTTGATTACAGGAATATAAGGATACTTCCATCATTGTACATCTTAAAAAGATGGACAAAAGATGCGAGAGTTGATTTTTGGAGGCATACCCGAAACCACTGGTAG 2802 0.404 MKWFNQKTRLPIYHWNRTAQKALKFYGSSDCCALLFVISQHTPLSESIYSLRFTHHPHIFRSAVAVDFAPSLLSSLCLHQRYQLKFCACHGLFSSSSSPAFVSLKSMEGIEPDLKNHPPEDDVLNEGQTSPGVVSDVGQESQSPKASSIADSDMVIDGEHDCTSLNNCSVDQSQMEINDDCQNSKMSSDNKFQIDAANGQLSQSSIISSVDVSINSSAIKAEERLYVVPKIGMEFESEDHAYKCYSRYAVMQGFSIRKDFVNKSRVNGAVVSRRYTCYRQGYRPNKNNTNLKKSQPETRTGCLAHMTIARQPNGKFRVTHFETEHNHEFVTPCTAHMLPSVKRLSFAHAVESNVANDSGLDGVPKLGMGFDSEDHAYEFYNTYARCVGFSVRKDYVNRSKIDGAVASRRFTCFREGFRQKDKRDLNVKRPRKETRIGCLAQLVISRQPDSRYRVTHFEEKHNHELVAACRVHMLRSQKRIATAQAIESNMVDGSRVLPKPASESNCKAIEGSDDQGYDPIDYENKLPFKRSGEMKEGEIEKMKQHFQSKRSKNPSFFYAFQLDSDDQITNIFWADTKMVADYSDFGDVVCFDCSYRFCRDSRPFAPFLGVNNHKQMVIFGATLLYDETIESFKWLFHVFLEAMSMRKPKTVLIDQDDIIAEAISSVWHETNCQICVWHLYQNALKQLSHVCVGSGSFVNDLSSCFFDHEEEEDFVNAWNALLDRYNLWENECLRRIYESRDKWAVAYRKQIFCADITSVLRRENLSGSLKRYLKSDSDVLSFLKHLGKVVTDWHYKELEANYNMSQRMPALMGDVILLKHVRDPYTPKIFELFQKEYETCLNLVIKHFSESGSLYRYKVSLYEHEREYTVTFDSSNETVTCSCMKFESIGVLCSHALKVLDYRNIRILPSLYILKRWTKDARVDFWRHTRNHW 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1925 933 SMART 26again6 879 906 IPR006564 GO:0008270
Dere01g1925 933 MobiDBLite consensus disorder prediction 128 149 - -
Dere01g1925 933 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 218 345 IPR031052 GO:0006355
Dere01g1925 933 Pfam SWIM zinc finger 868 903 IPR007527 GO:0008270
Dere01g1925 933 Pfam FAR1 DNA-binding domain 245 330 IPR004330 -
Dere01g1925 933 Pfam FAR1 DNA-binding domain 378 466 IPR004330 -
Dere01g1925 933 MobiDBLite consensus disorder prediction 111 149 - -
Dere01g1925 933 ProSiteProfiles Zinc finger SWIM-type profile. 868 904 IPR007527 GO:0008270
Dere01g1925 933 Pfam MULE transposase domain 588 682 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1925 Dere-ChrDere01 33453963 33457583 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Dere01g1925 MULE 2.5e-20 CL0219