Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1883 ATGGCGAAATCATTATATCTAACCCACATATCGTCCCTCTTCTTGTCTAATTCCAAAGTTATGGCCTCTGCAAGAGTTTTCTATCAAATGCTTCCCTTTACAAATTTCACGTCCTTCAGCAAAGCAAATACTTTCTCTCTATCGCCCTCCTTACGGACCTTCTCCACCACACCCACCCCATACCCACTTCAGTACGAGATGATTATCAACCGTCCAGCTTATTCTGAGCGTGCCCATTCTCGCCGCCGACCTGTTCGACAAAATGAATCCAATTCAGAGAGCTTCCCTGAATCCGATTCTCCGGAAGAATCCGTTTCCGAATTGGGATTAGATAGTTGGGTCGATCGGAAATTGGCTTTGGAGAAAGAAACTGACCAATCCGGTACCCAAAAATTGGAGCTTGACAAGGCAAAGAGAAAATATTACCGAAAACGGAGGAAGAGAATGTATGGGTCGGACTCAGATGAAGAAAATAGGCAACCTGAAGAGAAGTTCGTGGAACTGAAGCCTGAGGTGGTGGAGCTTCCTACATTGCACAAGAGGGAGGAGGAATTGTATTTCTACGATACGTTTTCTTATCCCTGGGAAAAAGAGAAGCATTATAAGATGGTTTATCAGTTGGAGAAGAAATATTTTCCTGACCAGTGTCTTGATAAAGCGTTCCTTGAACCGGGAGAATCGAATGCGAACGTAAATCCGGACGTAAAGACTAAGAGCAAGATGAAAGGAAAGAAGAAAGTCAGAGATGATAAAAAGGAGAAAAAAGATGAGGCTAGTGATGAAAGAAATGATAAGAAGTTGATCTTCTTCGAGGAGAAAGAAGAAGAAGAAGAAGAAAAAACTAATAATAGTGGATTAGTTAAGGATGCAACAAAAGATCTAACCGAAAAGAAGGTTGAAGAGTTCTTTAAGTACTTGAAAAAGGTTCCCAATAAGGATGTTGAAGTTGGTAATGCAGAGCCGTATCTTGTGTCAAGGAGTTCTGGGCTCCCTCCCACATGGGATGGTCCTCATGGAACCGTTATTTTGGTGAATAAACCCAAAGGTTGGACTTCATTTACGGTTTGTGGAAAGCTGCGTCGCATAGTCAAAGTGAAAAAGGTAGGTCATGCTGGAACTCTTGATCCTATGGCTACTGGTTTATTGATTGTTTGTGTTGGTAAAGCAACAAAACTGGTCGAGAGATATCAAGGGATGATTAAGGGCTACAGTGGGGTTTTCCGCCTAGGGGAGGCTACATCAACATGGGATGCTGATTCAGCGGTCATTCAGCGTGAGCCATGGGAGCACATCAAAGATGAGGACATAAAGAGAACTGCAGTGTCCTTTTGCGGGGAGATTTGGCAAGTTCCTCCAATGTTCTCTGCTATCAAAGTTGGAGGTGAGAAGATGTATGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCACCTCGACGAATATCAATTTTCCAGTTTGACATAGAGCGTAGTTTGGATGATAGACAAAATTTGATTTTTAGGGTAAAATGTTCCAAAGGGACATATATTCGGTCATTATGTGCAGATTTTGGGAAAGCTCTTGGCAGTTGTGCCCATTTGACTGCTCTCCGCAGAGATTCAATCGGAGAATATTCAGCAGATGATGCATTGGACTTCACAGAGCTGGAAGAGGCTATTCCCAGAAGTTATTTCTAA 1677 0.4258 MAKSLYLTHISSLFLSNSKVMASARVFYQMLPFTNFTSFSKANTFSLSPSLRTFSTTPTPYPLQYEMIINRPAYSERAHSRRRPVRQNESNSESFPESDSPEESVSELGLDSWVDRKLALEKETDQSGTQKLELDKAKRKYYRKRRKRMYGSDSDEENRQPEEKFVELKPEVVELPTLHKREEELYFYDTFSYPWEKEKHYKMVYQLEKKYFPDQCLDKAFLEPGESNANVNPDVKTKSKMKGKKKVRDDKKEKKDEASDERNDKKLIFFEEKEEEEEEKTNNSGLVKDATKDLTEKKVEEFFKYLKKVPNKDVEVGNAEPYLVSRSSGLPPTWDGPHGTVILVNKPKGWTSFTVCGKLRRIVKVKKVGHAGTLDPMATGLLIVCVGKATKLVERYQGMIKGYSGVFRLGEATSTWDADSAVIQREPWEHIKDEDIKRTAVSFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVKCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGEYSADDALDFTELEEAIPRSYF 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1883 558 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 210 554 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Dere01g1883 558 Pfam tRNA pseudouridylate synthase B C-terminal domain 511 553 IPR032819 -
Dere01g1883 558 Gene3D Pseudouridine synthase 336 557 - -
Dere01g1883 558 NCBIfam tRNA pseudouridine(55) synthase TruB 340 549 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Dere01g1883 558 CDD PseudoU_synth_EcTruB 341 552 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Dere01g1883 558 MobiDBLite consensus disorder prediction 224 259 - -
Dere01g1883 558 Coils Coil 241 264 - -
Dere01g1883 558 SUPERFAMILY Pseudouridine synthase 340 552 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Dere01g1883 558 Pfam TruB family pseudouridylate synthase (N terminal domain) 360 510 IPR002501 GO:0006396
Dere01g1883 558 Hamap tRNA pseudouridine synthase B [truB]. 338 558 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Dere01g1883 558 MobiDBLite consensus disorder prediction 76 106 - -
Dere01g1883 558 FunFam tRNA pseudouridine synthase B 335 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1883 Dere-ChrDere01 33108223 33114517 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1883 341 532 NAC Transcription Factor Family AT3G57150 35.417 8.68e-21 94.4