Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1880 ATGGCTAGGAGCTGGTTCATTGACATAAAAGGATTTGCAAAGAAAGTGAGAAACTGTACTCTGTCTTCAACGGATCAAATCAAAGACTGTGGCGCATATCGTGAATGCCCAAATTGTCGTTATCATATTGATAACACTGATGTTTCTCCTGAGTGGCCTGGCTTTCCCGCAGGTGTAAAGTTTGATCCATCTGATGCAGAGCTCCTCGAACATTTAGCAGCAAAATGTGGAATGGAGAACAGAGAGCCCCACATGTTTATCCATGAGTTCATCCCAACAGTAGAGGGAGACCAAGGTATCTGCTACACACATCCAGAAAATCTTCCTGGTGCTAAGAAAGATGGGAGCAGTGTCCATTTTTTTCACAGAATAATTTATGCATATGCTACTGGTCAACGGAAGCGTCGAAAGATTCATCATGAAGATGGTTTGACTGAGGAGCATGTGCGGTGGCACAAGACTGGTAAGACCAAGCCTGTGATTGAAGATGGATTGCAGAAGGGCTTTAAAAAGATCATGGTTCTTTATATAAGATCTAAGAAGGACTCCAAGCCATATAAATCTAATTGGGTGATGCACCAATACCATCTGGGAACGGATGAGAAGGATGGTGAATATGTGGTTTCGAAAATATTTTTTCAACAGCAGAAGCAGACTGAGAAAAACGAGGAAAATCCTGTGGTTGAAGATTCTGATAATAAGACATCACGAACGAGTCCAAAAACCCCAAAACGAAACCTTCCCAGTCCACCTCTATCAGGAAAATCATTTTACTGTGATGATAATGTTGATGAAACTGTGCTCCTGTCACTCAACCAGGATACCAAATCTATTCCTCGAGAATCTCATGCCTCACCATCTGATGTTCATGATGAAGACAATACAAGCAGCCCTGCTTGGCTGGCTGGTGAATCACAGGCTGTTGAAAACTCTGACTTTGATGGCTTGAATGACATCTTATTGTGCAAGGAAATCTTAGATTCTCCTTCTCTCTTAAATGACCCAAGATTGAACTGCACTACTCTTGATGGCTTTGCTTGCAACACAAATGAATTGGCTAGCCATGATAATTTATCCGATGGAATTCCTGACCTAGATAACGTGGAATTGGATACTCCTCCAGATTTCCAACTTTCTAATTTGCAATATTGTTCTCAAGACAGTATCCTGGAGTGGATAGACAGATTATGA 1191 0.4156 MARSWFIDIKGFAKKVRNCTLSSTDQIKDCGAYRECPNCRYHIDNTDVSPEWPGFPAGVKFDPSDAELLEHLAAKCGMENREPHMFIHEFIPTVEGDQGICYTHPENLPGAKKDGSSVHFFHRIIYAYATGQRKRRKIHHEDGLTEEHVRWHKTGKTKPVIEDGLQKGFKKIMVLYIRSKKDSKPYKSNWVMHQYHLGTDEKDGEYVVSKIFFQQQKQTEKNEENPVVEDSDNKTSRTSPKTPKRNLPSPPLSGKSFYCDDNVDETVLLSLNQDTKSIPRESHASPSDVHDEDNTSSPAWLAGESQAVENSDFDGLNDILLCKEILDSPSLLNDPRLNCTTLDGFACNTNELASHDNLSDGIPDLDNVELDTPPDFQLSNLQYCSQDSILEWIDRL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1880 396 MobiDBLite consensus disorder prediction 215 255 - -
Dere01g1880 396 SUPERFAMILY NAC domain 40 214 IPR036093 GO:0003677|GO:0006355
Dere01g1880 396 FunFam NAC domain-containing protein 8 64 218 - -
Dere01g1880 396 ProSiteProfiles NAC domain profile. 55 214 IPR003441 GO:0003677|GO:0006355
Dere01g1880 396 MobiDBLite consensus disorder prediction 273 298 - -
Dere01g1880 396 Pfam No apical meristem (NAM) protein 56 197 IPR003441 GO:0003677|GO:0006355
Dere01g1880 396 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 309 IPR044799 GO:0003700
Dere01g1880 396 MobiDBLite consensus disorder prediction 222 239 - -
Dere01g1880 396 Gene3D NAC domain 64 220 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1880 Dere-ChrDere01 33089909 33093943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1880 36 216 NAC Transcription Factor Family AT1G28470 54.787 1.26e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere01g1880 NAM 5.1e-20 No_clan