Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1874 ATGGAGAAAGAGGTTGTCGAAAACCTATGGAACGGTGAGAGAGAAGCGCAAATTCAAGCAGCAATGGAACTCAGTAGATTAAGCAGCAAGCAGAGGCACAAGTTGGCAGAAAGAGGAATAATGGTGCCTCTGGTTTCTATGCTTCAGTCTCAAGACTACGAAGCCATTGAAGCTTCTCTCTGTGCTCTGCTCTGTCTTGCCTTTGGCAGTGAACGAAACAAGATTCGGATCGTTAAGTCTGGAGCTTTACCAGTGTTGTTGAGTCTCCTCCAATGCCAAAGCCAACAACTCGTGGAATTGACAATAGCTGCCATGCTAACTCTCTCTTCTTGCAAAGCAAATAAGGCAGGAATAGCTTCATCTGGGGCTATCCAACTATTAGTAGAAGTTCTCAATGGCCACTACGAAAGCGGCACAAACACTCGGTCACAGCTTGATACCATAGCTACCCTCCATAACCTCTCAACCTGCCAAGAGATAATACCTCTGATAGTCTCTTCTAATATTACAATGTCTTTGCTCGAACTGATTCACAACTCAGGAAAATCAAGTGAGATAGTTGAGAAAGCAATTGGGTTGCTGGAAAATATAGTGTATTCATCAGAGAGAGCACTCAGTGAGGCTGCTAGTATAGGAGGGGCAATCAGAATAGTGGTTGAGACTATTGAAGAAGGGTCTATGATAGGGAAAGAGCATGCAGTGGGGATACTGCTTCTGATATGCAAGAGCTGCAGAGAGAAATACAGAGGAATGATATTGAGAGAGGGAGTGATGCCTGGACTGCTTCAGTTAAGCGTGGACGGAACACAGAGGGCAAAAGGGTTGGCTCGAGAATTGCTGTTGCTTCTGAGGGATTGCTCCAAATATGGTTCAACAAGTAGTAAGCAGATGAATCATGGGATTCTGGAACAGATAATGCAGGAGATTGATGAGGAAGGGGAGGAATTGGCTGGTAGTACTTTGAGATTGGTAGAGGAGATGATTGCCAAGCTCAATACATCATGTTCAGCCTCCAGATGA 1020 0.448 MEKEVVENLWNGEREAQIQAAMELSRLSSKQRHKLAERGIMVPLVSMLQSQDYEAIEASLCALLCLAFGSERNKIRIVKSGALPVLLSLLQCQSQQLVELTIAAMLTLSSCKANKAGIASSGAIQLLVEVLNGHYESGTNTRSQLDTIATLHNLSTCQEIIPLIVSSNITMSLLELIHNSGKSSEIVEKAIGLLENIVYSSERALSEAASIGGAIRIVVETIEEGSMIGKEHAVGILLLICKSCREKYRGMILREGVMPGLLQLSVDGTQRAKGLARELLLLLRDCSKYGSTSSKQMNHGILEQIMQEIDEEGEELAGSTLRLVEEMIAKLNTSCSASR 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1874 339 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 81 123 IPR000225 GO:0005515
Dere01g1874 339 FunFam U-box domain-containing protein 4 3 201 - -
Dere01g1874 339 FunFam U-box domain-containing protein 4 205 322 - -
Dere01g1874 339 Gene3D - 3 337 IPR011989 -
Dere01g1874 339 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 168 212 IPR000225 GO:0005515
Dere01g1874 339 SUPERFAMILY ARM repeat 4 323 IPR016024 -
Dere01g1874 339 Pfam Armadillo/beta-catenin-like repeat 71 99 IPR000225 GO:0005515
Dere01g1874 339 PANTHER U BOX DOMAIN-CONTAINING 4 286 - -
Dere01g1874 339 SMART arm_5 70 110 IPR000225 GO:0005515
Dere01g1874 339 SMART arm_5 157 199 IPR000225 GO:0005515
Dere01g1874 339 SMART arm_5 28 68 IPR000225 GO:0005515
Dere01g1874 339 SMART arm_5 111 156 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1874 Dere-ChrDere01 33011436 33012894 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1874 4 285 U-box Gene Family AT3G54790 34.266 6.73e-28 112