Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1870 ATGGCTTGTTCCTTCCTTTCTGGCCTTTATGGAGTTCATAGCGGCCAGAGAGTAACTAGGCTTCTTGGGAAACTCGTAAACACTTCGCCTTGCCATCCGTTGCTGTGTGATTTCCTCCGCAATGCTTTCTATTCAATTGGACGGCTTTTCCGAGATTCAATCCGTGACGGCCTGACGGTACGTTCACAGGATTTCTTGATGGAGTCACCTGTCAATGGAGTTGAGTCTTCATCAGAGGTTCAGAATTCAGTTTCTGCACTAGATCACGACCCTCCGTCAACATCTGAAACTCCCAGGTCTTCCCGGCCTCCCTTGAGAGCATCATCTAAAAATCACGTGGCCTCTTCCACATCTTATCTCACTGGTCATCCTAATTATGGAATGAAGACTCACCAAAAGCATCCTTATCAGGAAGCCAACCATGTGCAGCATCAAGAACTACCAAATACGGCAAAGCAGTATCATAATTCTAGTGGAAAATCTGTAGAAACTTGTCGAGGGAAGAATATCTCTACGCTGGAAACAAAGAATTATGATGCAAATGGCATATTAGCCCCATCTAAAGGTGGTGTTGATCAAACAAAGAGTTGCTCTCAATCAGAAATTACTTTTTGTCCAAGTCCTCAGAATAGCTTCTATTCTGCCGCTACCTATTCAGAAGCCAAACAAAGTTTTGCCAATACTGAAGTCAGTGAGTGTATTAGTGTCGAGAAGTCTGGTGAAAGTGGTGAAGTCACTAACTCTTGTGACTTCAACGAGAGCAGGAAGACCAGCATCTGTAGAGGGAGTACTGGGAGTGATGTAAGTGATGAGAGTAGCACCAGTAGTTTGAGCAGCGCTTTGTATAAACCCCACAAGGCAAATGATATAAGATGGGAAGCGATTCAAGCCGTCCGAGCTCGCGATGGGATGCTGGAAATGAGGCATTTCAGGTTGTTGAAGCAATTGGGATGTGGAGACATAGGAAGTGTTCATCTTGCAGAGTTGAGTGGCACAAGGACCTGTTTTGCAATGAAGATAATGAATAAAACAGAGCTGGCAAGTCGGAAGAAGCTTCTGAGGGCTCAGACAGAAAGAGAGATATTGCAGTCTCTGGATCACCCCTTTTTACCCACATTATACACACATTTTGAGACAGAAACATTCTCTTGCTTGGTAATGGAGTTTTGCCCTGGTGGGGACTTGCATGCACTCAGGCAAAGACAACCAAGGAAGTATTTTTCCGAGCATGCTGCCAGGTTTTATGTAGCTGAAGTTCTTCTTGCTTTGGAATACCTTCACATGCTTGGGATCATCTATAGAGACCTGAAACCAGAGAACGTGTTGGTGAGAGAAGACGGTCACATAATGCTCTCAGACTTCGATCTCTCTCTGCGATGCGCCGTGAGTCCAACTCTGGTAAAATCCTCAAACTCAACCCTAGACGCAAGAACCTCAGGATACTGCATTCAGCCAACCTGCATCGAACCAACCTGCGTGATGCAGCCAGATTGCATCCAACCCTCCTGTTTCACACCTCGCTTCCTATCAAGCAAATCCAAGAAAGACAAAAAGCCCAAACCGAAGGCCGAAACGCATCACCAGGTGACTCCTCTCCCAGAGCTCATCGCCGAGCCCACAAACGCCCGATCCATGTCGTTCGTGGGCACGCACGAATACTTAGCCCCCGAAATCATAAAAGGCGAAGGCCACGGAAGTGCAGTGGACTGGTGGACCTTCGGGATATTCTTGTACGAGCTGTTGTTCGGAAGAACGCCGTTCAAAGGGTCGGCGAACAGAGCGACTCTGTTCAACGTGGTTGGGCAGCCATTGAGGTTTCCAGAATCACCGACGGTTAGCTTCGCTGCTAGGGATTTGATTAGGGGATTACTTGTGAAAGAGCCTCAGCATCGTCTCGCTTATAGGCGTGGAGCTACGGAGATCAAACAGCACCCATTCTTTCAGAACGTGAATTGGGCGCTCATACGGTGTGCCAATCCTCCCGAAGTGCCTAGGATGGTGGCCATGAAAGACGTCGCGGCTCATAAACCGACTGGCGTGAAGCCTTCTGGTAACTATCTAGATATTGATTTCTTTTGA 2079 0.4728 MACSFLSGLYGVHSGQRVTRLLGKLVNTSPCHPLLCDFLRNAFYSIGRLFRDSIRDGLTVRSQDFLMESPVNGVESSSEVQNSVSALDHDPPSTSETPRSSRPPLRASSKNHVASSTSYLTGHPNYGMKTHQKHPYQEANHVQHQELPNTAKQYHNSSGKSVETCRGKNISTLETKNYDANGILAPSKGGVDQTKSCSQSEITFCPSPQNSFYSAATYSEAKQSFANTEVSECISVEKSGESGEVTNSCDFNESRKTSICRGSTGSDVSDESSTSSLSSALYKPHKANDIRWEAIQAVRARDGMLEMRHFRLLKQLGCGDIGSVHLAELSGTRTCFAMKIMNKTELASRKKLLRAQTEREILQSLDHPFLPTLYTHFETETFSCLVMEFCPGGDLHALRQRQPRKYFSEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSSNSTLDARTSGYCIQPTCIEPTCVMQPDCIQPSCFTPRFLSSKSKKDKKPKPKAETHHQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVVGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNVNWALIRCANPPEVPRMVAMKDVAAHKPTGVKPSGNYLDIDFF 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1870 692 MobiDBLite consensus disorder prediction 510 529 - -
Dere01g1870 692 MobiDBLite consensus disorder prediction 70 136 - -
Dere01g1870 692 Pfam Protein kinase domain 544 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1870 692 Pfam Protein kinase domain 311 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1870 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Dere01g1870 692 SUPERFAMILY Protein kinase-like (PK-like) 288 667 IPR011009 -
Dere01g1870 692 FunFam Serine/threonine-protein kinase D6PK-like 308 393 - -
Dere01g1870 692 CDD STKc_phototropin_like 308 665 - -
Dere01g1870 692 Gene3D Phosphorylase Kinase; domain 1 309 393 - -
Dere01g1870 692 Gene3D Transferase(Phosphotransferase) domain 1 542 665 - -
Dere01g1870 692 FunFam serine/threonine-protein kinase D6PK-like 542 665 - -
Dere01g1870 692 PANTHER FLIPPASE KINASE 1-RELATED 140 670 - -
Dere01g1870 692 SMART serkin_6 310 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1870 692 FunFam serine/threonine-protein kinase D6PK-like 394 461 - -
Dere01g1870 692 MobiDBLite consensus disorder prediction 70 125 - -
Dere01g1870 692 Gene3D Transferase(Phosphotransferase) domain 1 394 490 - -
Dere01g1870 692 ProSiteProfiles Protein kinase domain profile. 310 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1870 Dere-ChrDere01 32996032 32999466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1870 218 692 AGC Kinase Gene Family AT5G47750 71.951 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Dere01g1870 Pkinase 7.5e-37 CL0016