Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1868 ATGGACTCACCCATTAACGACCCAACTGTTGACGGAGAAACCAACGACGCGAGGTCCTTTGGCAACAGAGAAGAAGAGGAGGAGGACAAGTCTCAGCCTCTTACCGGTGATGGAGCAAGTCCCGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACAATTGCTCAATTTGTCAAGCACTTTGGTAAATATGGTGAGATTACGGACTCTGTGATAATGAAGGACCGGAAGACTGGGCAACCTCGTGGATTTGGTTTTATAACTTATGCAGATCCCTCTGTGGTTGATAAAGTCATCGATGATACTCATATCATCAATGGCAAACAAGTGGAAATTAAGCGTACAATACCAAGGGGAGCTGTTGGCTCCAAGGATTTCAGGACAAAGAAAATTTTTGTGGGTGGAATTCCCTCTACCGTGACTGAAGATGAGTTTAGAGACTTCTTTGCTCACTATGGAGAGGTCAAAGATCACCAAATAATGCGAGATCATTCCACCAATCGTTCTCGTGGCTTTGGGTTTATCACCTTTGACTCTGAGGAATCCGTTGAAGATCTCCTCGCTAAGGGGAACAAAATTGAATTTTCTGGGGCTCAGGTGGAAATCAAAAAGGCTGAGCCAAAGAAGCCAAACCCTCCACCACCACCATCTAAGCGCTACAATGACTCAAGATCTTCATTTAGTGGTGGGTATGGAGATGCTTATGACGGGTTTGGTGGTGGCTTTGGTGTTGGGGGATATAGGTCAGGTGGGGTCTATGGCGGCAGGGGTGGTCCTTATGGTGGGTATGGAGGTGAATTTGGTGGGTATGGAGGATATGCTGGGGCCATGGGGCCTTATAGAGGAGATCCCTCCCTTGGGTACTCTGGTCGTTATGGAGGTGGGTTTAGCAGAGGTTATGACCTTGGAGGATATGGTGGACCCAGTGAGAGTTATGGGGGATACAGTGGTGTTGGTTCTTCAGGTGGTGCCTACGGAAGTGGGTATGATGCCAGCCTAGGGGGTGGATATGGTGGTGCTGGCGGCAGCGGAGCCGGAGGTTCCTTCTATGGGAGTAGAGGTGGATATGGTGGTGCAGGGTCTGGTCGATATCATCCTTATGGAAGATAG 1113 0.4852 MDSPINDPTVDGETNDARSFGNREEEEEDKSQPLTGDGASPGKIFIGGLARETTIAQFVKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIDDTHIINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSTVTEDEFRDFFAHYGEVKDHQIMRDHSTNRSRGFGFITFDSEESVEDLLAKGNKIEFSGAQVEIKKAEPKKPNPPPPPSKRYNDSRSSFSGGYGDAYDGFGGGFGVGGYRSGGVYGGRGGPYGGYGGEFGGYGGYAGAMGPYRGDPSLGYSGRYGGGFSRGYDLGGYGGPSESYGGYSGVGSSGGAYGSGYDASLGGGYGGAGGSGAGGSFYGSRGGYGGAGSGRYHPYGR 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1868 370 SUPERFAMILY RNA-binding domain, RBD 126 238 IPR035979 GO:0003676
Dere01g1868 370 MobiDBLite consensus disorder prediction 17 33 - -
Dere01g1868 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 200 IPR000504 GO:0003723
Dere01g1868 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 111 IPR000504 GO:0003723
Dere01g1868 370 SMART rrm1_1 131 204 IPR000504 GO:0003723
Dere01g1868 370 SMART rrm1_1 43 114 IPR000504 GO:0003723
Dere01g1868 370 Gene3D - 42 119 IPR012677 -
Dere01g1868 370 SUPERFAMILY RNA-binding domain, RBD 39 120 IPR035979 GO:0003676
Dere01g1868 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 208 IPR000504 GO:0003723
Dere01g1868 370 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 17 370 - -
Dere01g1868 370 FunFam Heterogeneous nuclear ribonucleoprotein 1 41 122 - -
Dere01g1868 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Dere01g1868 370 Gene3D - 120 220 IPR012677 -
Dere01g1868 370 MobiDBLite consensus disorder prediction 1 43 - -
Dere01g1868 370 MobiDBLite consensus disorder prediction 1 16 - -
Dere01g1868 370 FunFam Heterogeneous nuclear ribonucleoprotein 1 123 243 - -
Dere01g1868 370 MobiDBLite consensus disorder prediction 200 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1868 Dere-ChrDere01 32982136 32986588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1868 42 196 Eukaryotic Initiation Factors Gene Family AT1G71770 27.879 1.37e-11 63.9