Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1856 ATGGCTTCTTCTTCAAGCTACTCAAACTCTCCATGTGCTGCGTGCAAGTTTCTGAGAAGAAAATGCATGCCAGACTGCATATTCGCTCCATATTTCCCACCAGAGGAGCCTCAGAAGTTTGCCAACGTTCACAAAATATTTGGTGCAAGCAACGTCAGCAAGCTGCTGAACGAAGTGCAACCCCATCAGAGAGAGGATGCTGTCAACTCTCTGGCTTATGAAGCCGAAGCAAGGATCAAGGATCCTGTGTATGGCTGTGTAGGGGCCATTTCGGTGCTCCAGAGGCAAGTCATTAGGCTTCAGAAGGAACTTGATGCCACTAATGCAGATTTGATTCGCTATACCTGCAATCATGAAATGCCTAGTACTGCCAATCAAGCTTCGGGAAGAAGGATGGGTGATGAAGGTGGTGGTTCTTCTCTTGGTCAATCTCCTCCTGACTATTATTATCCTTCTCCTTGGAATAATTACTAG 474 0.4641 MASSSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNHEMPSTANQASGRRMGDEGGGSSLGQSPPDYYYPSPWNNY 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1856 157 MobiDBLite consensus disorder prediction 122 157 - -
Dere01g1856 157 Coils Coil 90 110 - -
Dere01g1856 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 123 - -
Dere01g1856 157 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Dere01g1856 157 Pfam Lateral organ boundaries (LOB) domain 11 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1856 Dere-ChrDere01 32880034 32880507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1856 5 114 AS2 family AT3G27650 85.455 5.48e-70 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere01g1856 LOB 7.8e-43 No_clan