Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1847 ATGCCCAGAGCCACACTGTCAGAGAGGGTGGGGGATGACAGGTCCGTTCCATGTTTAGATGCCGAGTCTGATCAGCATTCTGAACCATCAAATGTCAATGGAGTAAGTTGTGAAGCTGACAAATCAAGCCTTCAGTCTCCTCAGGAATCACAAAGCAGGCAACTAAGAAGCTGCACTAAGGTTCACATGCAAGGAATGGCTGTTGGAAGGGCTGTGGATTTGACTCGGTTTGATGGATATGAGGATCTGCTTAAGAAATTAGAGCAGATGTTTGGCATCAAGGGTGAGCTTTGTAGGTCCAATAAAACATGGCAGGCTGTCTACACCGATAATGAAGATGATGTGATGATGGTTGGAGATGTTCCATAG 369 0.4607 MPRATLSERVGDDRSVPCLDAESDQHSEPSNVNGVSCEADKSSLQSPQESQSRQLRSCTKVHMQGMAVGRAVDLTRFDGYEDLLKKLEQMFGIKGELCRSNKTWQAVYTDNEDDVMMVGDVP 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1847 122 MobiDBLite consensus disorder prediction 1 21 - -
Dere01g1847 122 ProSiteProfiles PB1 domain profile. 56 122 IPR000270 GO:0005515
Dere01g1847 122 SUPERFAMILY CAD & PB1 domains 57 122 - -
Dere01g1847 122 Gene3D - 51 122 - -
Dere01g1847 122 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 29 122 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dere01g1847 122 MobiDBLite consensus disorder prediction 24 56 - -
Dere01g1847 122 Pfam AUX/IAA family 41 92 IPR033389 -
Dere01g1847 122 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1847 Dere-ChrDere01 32710631 32710999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1847 4 122 B3 DNA Binding Superfamily AT1G59750 62.903 2.37e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere01g1847 AUX_IAA 8e-08 CL0072