Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1846 ATGAGCGAAGGAACTCGCTCAATAAGAACCTCAAGATCAGCCCACGTCACCCTTCAATCCCACGCATACTGCAATGGGATTTATGGATCAGCATTGGAGCTGGAGGGAGAAATCAAGGACACCCATCTGACAGTATGCGAGGGAGGGCGGATGGAGCAGCAAATGAATGGTAGAGTAATGCGTGAAGGGGATTTACGGTCGCTAAGCTTATTCATCAGCCCTGGTTCTCAGTCTAGCTCAGTCACGGTTCCCTCATTACCCACGCAAACTAAAAAGAGAGACTCTGCCAAGTTGGGCCACAAGCAGCCTGTCCATAGGAAATCCATTGACACTTTCGGCCAGAGAACTTCCCAGTATAGAGGCGTCACCAGACACAGATGGACCGGTAGATATGAGGCCCATTTGTGGGATAACAGTTGTAAGAAGGAAGGGCAGACCAGGAAGGGAAGACAAGTTTATTTGGGGGGATATGATATGGAAGAAAAAGCAGGGCCGAACCCACTGTGTGAAGCTGGTGCACCGTCTACACTTACTGCATCCGACGCCAGTACCCATGGAGGATTTTCTGTTCTTCGAAGACATGCGGATGAATGTTTGCCACCCTTGGATATGTCTCAGCAGCCACCATGGCAAGGATTGGTTGCAACTGATTCTATGCATCTTGGTGTTCTGGCTACTACATCTCCTGCCATTTCAAATGGAACTCTGTTTTCTGTATTTTACAAGCCCAGAACAAGCCGATCAGAGTTTATTGTGAGTCTCAACAAATATCTTGAAGCTCGAAGTCATAAGCTCTCTGTAGGGATGAGAGTCAAAATGAGATTTGAGGGCGATGAAGTTCCTGAAAGAAGGTTCAGTGGCACAATTGTGGGTGTTGGAGATAACAACTCACCAGTCTGGGCAGATTCTGAGTGGCAATCATTAAAGGTGCAATGGGATGAACCCTCATCTATTTTGCGTCCTGATAGAGTTTCTCCTTGGGAATTGGAGCCACTTGTGGCCACCGCTCCTGCAAACCCGCAACTAACCCAGAGAAATGAGAGGGCTCGTCCTCCCATTCTACCTTCAGCAGTACCTGATTCTTCTCTACATGGCACATGGAAATCACCAGTTGAATCTCCTTCTCTCTCCTATCGTGACTCACAACATGGACGGGATCTCTATCCATCATCTAAGTTCAATTCTACTACAACTAACTTTCTTGCTTTTGGTTGGAATAACTCTATCGGGGCTGCTTCCAACAATTCCATATATTGGTCTAATAGGGCGGAAAACTCTAAAGAGTATCTTTCACCTATGGCTATTAAAGAATCTGGTGAAAAGAAACAGGGAACTGGAAATGGCTGTAGGCTCTTTGGGGATTCAGCTACTTGA 1374 0.4672 MSEGTRSIRTSRSAHVTLQSHAYCNGIYGSALELEGEIKDTHLTVCEGGRMEQQMNGRVMREGDLRSLSLFISPGSQSSSVTVPSLPTQTKKRDSAKLGHKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAGPNPLCEAGAPSTLTASDASTHGGFSVLRRHADECLPPLDMSQQPPWQGLVATDSMHLGVLATTSPAISNGTLFSVFYKPRTSRSEFIVSLNKYLEARSHKLSVGMRVKMRFEGDEVPERRFSGTIVGVGDNNSPVWADSEWQSLKVQWDEPSSILRPDRVSPWELEPLVATAPANPQLTQRNERARPPILPSAVPDSSLHGTWKSPVESPSLSYRDSQHGRDLYPSSKFNSTTTNFLAFGWNNSIGAASNNSIYWSNRAENSKEYLSPMAIKESGEKKQGTGNGCRLFGDSAT 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1846 457 Pfam AP2 domain 118 163 IPR001471 GO:0003700|GO:0006355
Dere01g1846 457 SMART rav1_2 118 180 IPR001471 GO:0003700|GO:0006355
Dere01g1846 457 SUPERFAMILY DNA-binding domain 117 163 IPR016177 GO:0003677
Dere01g1846 457 MobiDBLite consensus disorder prediction 436 457 - -
Dere01g1846 457 Gene3D - 264 337 - -
Dere01g1846 457 FunFam Auxin response factor 264 336 - -
Dere01g1846 457 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 176 217 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dere01g1846 457 MobiDBLite consensus disorder prediction 335 375 - -
Dere01g1846 457 Gene3D AP2/ERF domain 117 171 IPR036955 GO:0003700|GO:0006355
Dere01g1846 457 MobiDBLite consensus disorder prediction 76 105 - -
Dere01g1846 457 SUPERFAMILY DNA-binding pseudobarrel domain 176 218 IPR015300 -
Dere01g1846 457 Gene3D - 174 223 IPR015300 -
Dere01g1846 457 MobiDBLite consensus disorder prediction 76 92 - -
Dere01g1846 457 ProSiteProfiles AP2/ERF domain profile. 118 163 IPR001471 GO:0003700|GO:0006355
Dere01g1846 457 Pfam Auxin response factor 230 309 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1846 Dere-ChrDere01 32708743 32710608 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1846 213 453 B3 DNA Binding Superfamily AT1G59750 56.557 6.37e-78 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere01g1846 Auxin_resp 6e-32 No_clan