Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere01g1841 | ATGGAGGGCAGTTTAAGAAGTGATTTGGAATGCCGGAGGATAATGGATGGGAAGGCAAGTAACAGGAATTGTTTAGGAAAGCAAATTCCATTATGTTGCATGAAGTCTAAGGCTACTGTTGTTTCAGGGTGGTTCTCAAGATCCCAGTCTTGCTCTGGGGAACCGAGTGCCATTTATTTTAACAACCCCATATGGCTAGGAGAAGCTCACTCAATCAAAGTCGAAAAGATCCTGTACAAGGAGAAGTCCAAGTACCAAGAGGTCTTAGTTTTTGAGTCATCAACATATGGGAAAGTACTTGTACTTGATGGGATTGTTCAGGTGATCGAGAAAGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCTCTTTGTTCAATTCCATCCCCCAAAACAGTTTTAGTTGTTGGTGGTGGAGATGGCGGGGCTCTAAGGGAAGTATCCCACCACAAGTTAGCCGTTGGATTTGATGATCCTCGAGTACACTTGAATGTTGGTGATGCTGTTGAATTTCTTCAATGTGCCCCTGAAGGAAAGTATGATGCCATCATTGTTGATTCATCTAATCCTATGGGTCTTACTCAAGAACTTGTAGAGAAGCCATTTCTTAAGACTATAGCTAAAGCATTAAGGCCTGGTGGAGTGCTTCACAATATGATAAAAAGTATGTGGCTTCATACACACCTTATTCAAGAGACGATGTCCATGTGTCGAGAGATATTCAAAGGTTCAGTACATTATGCATGGGCAAGTGTTCCAACATATCCGAGTGGTGTGATCGATTTTCTTTTATGCTCTTCGGAGGGGTCACCTGTTGATTTTATAAATCCCATGAACCCCATCGAGATGGTTGAAGCTGAAAAGTCTACTGTACTCCTTAATTTTCACTTGGACCTTGTTAGCTTGGAAGTTGCTAGCAAGATACAATTGAAAGCGTTAGCAGAAGAGATGGCAGCAATTAACAAAGGATTACAAAAGGTTAAACAGGAGCTTGCAACATCTGAAAATGACTGCTCTATGGCTGAGACTTTCCGTAAGACATTGAAAGAATTTGTTGATGGTGCTGAGTCGAGGGTGCCATGA | 1086 | 0.419 | MEGSLRSDLECRRIMDGKASNRNCLGKQIPLCCMKSKATVVSGWFSRSQSCSGEPSAIYFNNPIWLGEAHSIKVEKILYKEKSKYQEVLVFESSTYGKVLVLDGIVQVIEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGALREVSHHKLAVGFDDPRVHLNVGDAVEFLQCAPEGKYDAIIVDSSNPMGLTQELVEKPFLKTIAKALRPGGVLHNMIKSMWLHTHLIQETMSMCREIFKGSVHYAWASVPTYPSGVIDFLLCSSEGSPVDFINPMNPIEMVEAEKSTVLLNFHLDLVSLEVASKIQLKALAEEMAAINKGLQKVKQELATSENDCSMAETFRKTLKEFVDGAESRVP | 361 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere01g1841 | 361 | Hamap | Polyamine aminopropyltransferase [speE]. | 43 | 315 | IPR001045 | GO:0003824 | |
| Dere01g1841 | 361 | Gene3D | Vaccinia Virus protein VP39 | 108 | 308 | IPR029063 | - | |
| Dere01g1841 | 361 | PANTHER | SPERMIDINE/SPERMINE SYNTHASE | 152 | 291 | IPR001045 | GO:0003824 | |
| Dere01g1841 | 361 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 43 | 273 | IPR029063 | - | |
| Dere01g1841 | 361 | Pfam | Formin Homology 2 Domain | 283 | 360 | IPR015425 | - | |
| Dere01g1841 | 361 | ProSiteProfiles | Polyamine biosynthesis (PABS) domain profile. | 42 | 268 | IPR030374 | - | |
| Dere01g1841 | 361 | Pfam | Spermine/spermidine synthase domain | 152 | 269 | - | - | |
| Dere01g1841 | 361 | Pfam | Spermidine synthase tetramerisation domain | 67 | 110 | IPR035246 | - | |
| Dere01g1841 | 361 | ProSitePatterns | Polyamine biosynthesis (PABS) domain signature. | 134 | 147 | IPR030373 | - | |
| Dere01g1841 | 361 | Coils | Coil | 311 | 338 | - | - | |
| Dere01g1841 | 361 | FunFam | Spermidine synthase 1 | 35 | 107 | - | - | |
| Dere01g1841 | 361 | Gene3D | Spermidine synthase, tetramerisation domain | 35 | 107 | IPR037163 | - | |
| Dere01g1841 | 361 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 280 | 359 | - | - | |
| Dere01g1841 | 361 | CDD | AdoMet_MTases | 160 | 217 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere01g1841 | Dere-ChrDere01 | 32476710 | 32478266 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere01g1841 | 285 | 360 | FH2 protein (formin) Gene Family | AT5G07780 | 60.526 | 9.77e-20 | 88.2 |