Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1821 ATGGGTTGTACGATTTGCCTCTTGACAATATCTTGCTTAGCCCATTGGGCCCGAATACTCTTTAAAGTGGCCGAACGGCCCAGATCCAAAACCCTAGCAGTGGGAGTGTACTATATATATCAGTACCATGTTCCGCTGCGCCATCTCCCGCATTATCGGCCCCTACATCACTCTGCAAAATGTGCAGACGTGCATATCTTCGTGAAAACCCTAACAGGGAAGACCATAACCCTAGAGGTCGAATCCTCAGATACCATAGACAGTGTGAAGGCCAAGATCCAAGACAAGGAGGGAGTACCCTCCGATCAGCAGCGTCTCATATTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTAAGCGATTACAACATCCAGAAGGAATCCACCCTGCACCTCGTCCTCCGGCTTCGCGGCGGCGCAAAGAAGCGCAAGAAGAAGACCTACACGAATCCTAAGAAGATCAAGCACAAGAAGAAGAAGGTGAAGCTCGCGGTCCTTCAGTTTTATAAGGTGGATGATTCTGGAAAAGTTCAGAGGCTGAGGAAGGAGTGCCCTAATGCTGAATGTGGGGCTGGAACTTTCATGGCCAATCATTTTGATCGCCATTATTGTGGCAAGTGCGGATTGACCTATGTTTACCAGAAGGCTGGTGGTGATTAG 660 0.5 MGCTICLLTISCLAHWARILFKVAERPRSKTLAVGVYYIYQYHVPLRHLPHYRPLHHSAKCADVHIFVKTLTGKTITLEVESSDTIDSVKAKIQDKEGVPSDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKTYTNPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1821 219 Pfam Ribosomal protein S27a 165 210 IPR002906 GO:0003735|GO:0005840|GO:0006412
Dere01g1821 219 Gene3D - 56 141 - -
Dere01g1821 219 FunFam Ubiquitin-40S ribosomal protein S27a 64 142 - -
Dere01g1821 219 PANTHER UBIQUITIN 66 150 - -
Dere01g1821 219 Gene3D - 142 217 IPR038582 -
Dere01g1821 219 PRINTS Ubiquitin signature 116 137 IPR019956 -
Dere01g1821 219 PRINTS Ubiquitin signature 74 94 IPR019956 -
Dere01g1821 219 PRINTS Ubiquitin signature 95 115 IPR019956 -
Dere01g1821 219 ProSitePatterns Ubiquitin domain signature. 90 115 IPR019954 -
Dere01g1821 219 CDD Ubl_ubiquitin 66 139 - -
Dere01g1821 219 SMART Ribosomal_S27_2 165 210 IPR002906 GO:0003735|GO:0005840|GO:0006412
Dere01g1821 219 ProSiteProfiles Ubiquitin domain profile. 64 139 IPR000626 GO:0005515
Dere01g1821 219 SMART ubq_7 64 135 IPR000626 GO:0005515
Dere01g1821 219 Pfam Ubiquitin family 66 137 IPR000626 GO:0005515
Dere01g1821 219 SUPERFAMILY Zn-binding ribosomal proteins 163 216 IPR011332 GO:0006412
Dere01g1821 219 SUPERFAMILY Ubiquitin-like 61 140 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1821 Dere-ChrDere01 32093608 32094267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1821 64 217 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 91.558 2.38e-85 248