Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1819 ATGATGTTAATCGAAGCCCACATGGAAGTAGGAAACAAATGGGTAGAAATCGCTCGCAGGCTTCCTGAAAGAACTGAAAACACCATCAAGAACCATTGGAACGCCACAAAGCGTGGACTCTACACGAAGAACAATAGTAACAGATCATCCACATCAAGGCCTTCACTTCTTCATGACTACATCAGGCACGTCATCACTTCGGCCCAAGCAACTCCGATGCAGCCGGAGATCAAAGTAAAACAACCTGATGATGAGGCCTACAACAACAACATCAGCAACAACAACGTTGTCAAAATTCGCTACCTTAGCGCGTCCGACGACGAGACTAGCTCCGAAGAATGGAACTTTGAGGGGTGCGAGCAGGTGGATGAGGTGGTGCGTGAAGGACAGGCGGTGAAGAAGGTGAATGATACTGTTACTGTCAGTAATTATAGAGGGGAAGAGGAGGTGGCAATGGTGATGAACAGCTTGGTGCATGAGGAAGACATAAAGAATGAGATGGATCTAATGGAGCTTATATGGGGAAGGCACTAA 534 0.47 MMLIEAHMEVGNKWVEIARRLPERTENTIKNHWNATKRGLYTKNNSNRSSTSRPSLLHDYIRHVITSAQATPMQPEIKVKQPDDEAYNNNISNNNVVKIRYLSASDDETSSEEWNFEGCEQVDEVVREGQAVKKVNDTVTVSNYRGEEEVAMVMNSLVHEEDIKNEMDLMELIWGRH 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1819 177 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 41 IPR017930 -
Dere01g1819 177 CDD SANT 2 37 IPR001005 -
Dere01g1819 177 SUPERFAMILY Homeodomain-like 2 45 IPR009057 -
Dere01g1819 177 ProSiteProfiles Myb-like domain profile. 1 37 IPR001005 -
Dere01g1819 177 Pfam Myb-like DNA-binding domain 3 34 IPR001005 -
Dere01g1819 177 Gene3D - 1 58 - -
Dere01g1819 177 PANTHER MYB PROTEIN-RELATED 2 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1819 Dere-ChrDere01 32066547 32067080 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1819 2 68 MYB Transcription Factor Family AT4G18770 61.194 7.57e-21 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere01g1819 Myb_DNA-binding 1.2e-08 CL0123