Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1816 ATGATCCTGATTGAAGCCCATAAGGAAGTAGGGAACAAGTGGGCAGAAATTGCACGCAAGCTTCCTGGAAGAACTGATAACACCATCAAGAACCATTGGAATGCCATGAAGCGTCGCCAAAATGCCATGATACAGAGGAACGAGGGATCTTCCTCTAGGCCTTCGCCTTTTAAAAACTACATCAAGCAAGTCACTTCGGCCCAAGCAGCTGCGAAGCAGTGCCCAAGCAGCTGCGAAGCAGTGTACGCGCAGGAAGACGTGATAGGTGATGATAAGGAAGAAGAGGAAGACAAGATGGTGGCTAATAATAATAATAACAATAATAATACCAATGGTAATGATGTTGGCATTGAGGAAGTTGCTACAAAAATGAGCAACTTGGTGCGCGAGGAGGACATGAAGAGGGATATAGATTTCATAGAGATGATTTGTGAAATTGGAAAGCGCTGA 450 0.4467 MILIEAHKEVGNKWAEIARKLPGRTDNTIKNHWNAMKRRQNAMIQRNEGSSSRPSPFKNYIKQVTSAQAAAKQCPSSCEAVYAQEDVIGDDKEEEEDKMVANNNNNNNNTNGNDVGIEEVATKMSNLVREEDMKRDIDFIEMICEIGKR 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1816 149 CDD SANT 2 37 IPR001005 -
Dere01g1816 149 SMART sant 1 39 IPR001005 -
Dere01g1816 149 MobiDBLite consensus disorder prediction 89 115 - -
Dere01g1816 149 MobiDBLite consensus disorder prediction 101 115 - -
Dere01g1816 149 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 41 IPR017930 -
Dere01g1816 149 PANTHER MYB PROTEIN-RELATED 2 91 - -
Dere01g1816 149 Gene3D - 1 54 - -
Dere01g1816 149 SUPERFAMILY Homeodomain-like 2 43 IPR009057 -
Dere01g1816 149 Pfam Myb-like DNA-binding domain 2 34 IPR001005 -
Dere01g1816 149 ProSiteProfiles Myb-like domain profile. 1 37 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1816 Dere-ChrDere01 31994161 31994707 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1816 2 76 MYB Transcription Factor Family AT4G18770 52.000 7.56e-21 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere01g1816 Myb_DNA-binding 4.7e-11 CL0123