Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1814 ATGCCTTGTAAGGAGGCATGGACAGAGGAAGAAGACAAGATCCTAATTGAAGCCCACAAGGAAGTAGGGAACAAGTGGGCAGAAATCGCACGCAAACTTCCTGGAAGAACTGATAACATTGTCAAGAACCATTGGAATGCCACAAAGCGTTGCCAAAACACCAAGAAACGGTGGAGCAAGGGATCCTCATCTAGGTCTTCACTTCTTCATGACTACATCAAGCAGGTCACTTCGGCCCAAGCAGCTACAAAGCAATGGGAGATCAAGGTCGAGCAGGTTGATGATGATGAACCCCACAGCAGCAATAACAACGTTAAAGTTTGCTACGAAAGTGCATTAGACGATGAAGACACTAGCTCTGATTGGGATATTGAAGTATGCGTGCAGATGGATGTGGCAGAGGTAGTTGCTGCAGAAATGAATAATCTGGTTTGCAAGGAATATATGAAGAGGAAGATAGATTTGCTTGAGATGACTTGCAGAACTGGAAAGCGCTAA 498 0.4498 MPCKEAWTEEEDKILIEAHKEVGNKWAEIARKLPGRTDNIVKNHWNATKRCQNTKKRWSKGSSSRSSLLHDYIKQVTSAQAATKQWEIKVEQVDDDEPHSSNNNVKVCYESALDDEDTSSDWDIEVCVQMDVAEVVAAEMNNLVCKEYMKRKIDLLEMTCRTGKR 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1814 165 SUPERFAMILY Homeodomain-like 4 59 IPR009057 -
Dere01g1814 165 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Dere01g1814 165 SMART sant 3 51 IPR001005 -
Dere01g1814 165 CDD SANT 6 49 IPR001005 -
Dere01g1814 165 Pfam Myb-like DNA-binding domain 4 46 IPR001005 -
Dere01g1814 165 ProSiteProfiles Myb-like domain profile. 4 49 IPR001005 -
Dere01g1814 165 Gene3D - 6 50 - -
Dere01g1814 165 PANTHER MYB PROTEIN-RELATED 4 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1814 Dere-ChrDere01 31914435 31915160 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1814 4 76 MYB Transcription Factor Family AT4G18770 63.014 1.36e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere01g1814 Myb_DNA-binding 1e-16 CL0123