Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1809 ATGCACGTGACTGGAAATGTTAGTTCTTCCATCAAAGGTCATGGAGTATCAGATGCAGAAGCTGGATTATCTCCAGAATCTTATCGCCGTCGCCATGAAATAACTGTAACTGGAGATAATGTTCCTCCTCCTTTCACATCATTTGGCTCTACTGGCTTTCCATCTGAGATTCTTAGAGAGGTACACAATGCTGGGTTCTCTGCCCCAACACCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAAGTAGAGATATAGTTGCCATTGCTAAAACGGGTTCTGGGAAAACCTTGGGATATTTAATCCCAGGATTTATCCACCTCAAACGCGTTGGTAATGACTCCAAATTGGGACCCACTGTATTGGTACTGTCTCCAACAAGGGAGCTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGCAAAATCATCCAGAATTTCTTGTGCATGTTTGTACGGAGGAGCACCAAAGGGTCCCCAATTGAGAGACATTGACCGAGGAGCAGATATTGTGGTTGCTACGCCTGGCCGATTGAATGATATTCTTGAGATGAGGAGAATTAGTCTTCACCAGGTCTCTTACCTTGTGCTAGACGAGGCAGACCGGATGCTGGATATGGGTTTTGAACCTCAAATTAGGAAGATTGTAAAGGAAGTGCCTACACGGCGGCAAACCCTCATGTTTACAGCAACATGGCCTAAGGAGGTTAGGAAAATTGCAGCTGATCTGCTGGTCAATCCTGTTCAGGTCAACATTGGCAATGTTGATGAGCTTGTTGCTAATAAGTCTATTACTCAGCATATAGAAGTATTGATGCCACTGGAGAAACACAGACGATTGGAGCAAATATTGCGGTCGCAGGATCCAGGATCAAAAATAATTATTTTTTGTTCTACCAAAAAGATGTGTGATCAACTTGCTCGTAATCTCACACGCCAGTTTGGGGCTGCTGCCATTCATGGGGATAAATCCCAAGGTGAGAGGGATCATGTGTTGAATCAGTTTCGAACTGGGAGGTCACCTGTGCTTGTAGCAACAGATGTTGCAGCTCGAGGATTGGACATCAAAGATATTAGGGTTGTTGTCAACTATGACTTCCCCACCGGCGTGGAGGACTATGTTCATAGGATTGGAAGGACAGGGAGGGCAGGAGCAACTGGCTTGGCTTACACATTTTTTGGAGATCAGGATGCAAAACATGCTTCAGATCTCATCAAAATCTTGGAAGGTGCAAACCAGAAAGTACCTCCAGAACTTCGTGATTTGGCATCACGTGGTGGTGGGATGAACAGATCCAGACGATGGGGTTCTGGTGGCCGTGGGGGACGCAGTGATTCCGGATATGGAGGAAGGGGCAGCGATTCTGGATATGGAGGAAGGGGTAATGATTCAGGTTATGGGGGAAGGAGTGGGTGGGGAGCCACTCCGGGTGGCCGAGGTGGTGGCCGTGGGTTTGACTATGATTTGCAGAGGAATGATCGGGGTTACTATGATGCGGATACCCGTGGGAAGTATGATAAAGGACGTAGTCATAGCCAGAGCCCTGATAAATCAAGTTGGGGTGATCGTAGTAAAAGCTTTAACCGTGACCGCAGCCGTAGTCCCGACAGACATGACAGGGCTGCACCACATTCCCAAGTTTACAGTTTTCACAATGCAATGATGGAGCGGAAAGGGGGCAGTGACCATGACAAAAGCTTTGATCGGGATAGAAGTCGTAGTCGCAGCCCTCCTAAGCATAATAGGGCTCCGCCATTGCGTGAACGTTCCCCAGTTAATAGTTTTCATCAATCAATGATGGAAAGGGGGGAACGGGGTCAATCATCTCCCCCATCTCGGCATCAGCAGCGTGTACCACCTTACAGCAGTGATAGTTGTAAGGACGACAAAGGTTCTAGATACACACATAGTACTTACCGAACTAGTTCACCATCCTCCCCTGGTGGCGGTAGGTCTGACAGAAGTCCACGTCAGGAGTGGGGAAGATCTCCTAGAAACAAGGTGGATGATGGAAGCTATGGTGGATCTCATTCTTCCTACCACGGGGAAGAGGAGGAAGGGTTGATTCCTGATGAAAGCATGACGCCGCAAGATGATGGTGTCTATGGGGTTGCGGATTAG 2124 0.4774 MHVTGNVSSSIKGHGVSDAEAGLSPESYRRRHEITVTGDNVPPPFTSFGSTGFPSEILREVHNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRVGNDSKLGPTVLVLSPTRELATQIQDEAVKFAKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEVPTRRQTLMFTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHIEVLMPLEKHRRLEQILRSQDPGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQGERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPELRDLASRGGGMNRSRRWGSGGRGGRSDSGYGGRGSDSGYGGRGNDSGYGGRSGWGATPGGRGGGRGFDYDLQRNDRGYYDADTRGKYDKGRSHSQSPDKSSWGDRSKSFNRDRSRSPDRHDRAAPHSQVYSFHNAMMERKGGSDHDKSFDRDRSRSRSPPKHNRAPPLRERSPVNSFHQSMMERGERGQSSPPSRHQQRVPPYSSDSCKDDKGSRYTHSTYRTSSPSSPGGGRSDRSPRQEWGRSPRNKVDDGSYGGSHSSYHGEEEEGLIPDESMTPQDDGVYGVAD 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1809 707 MobiDBLite consensus disorder prediction 592 623 - -
Dere01g1809 707 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 251 IPR014001 -
Dere01g1809 707 FunFam probable ATP-dependent RNA helicase DDX17 19 254 - -
Dere01g1809 707 FunFam ATP-dependent RNA helicase RhlB 255 427 - -
Dere01g1809 707 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 35 424 - -
Dere01g1809 707 CDD SF2_C_DEAD 265 394 - -
Dere01g1809 707 MobiDBLite consensus disorder prediction 499 545 - -
Dere01g1809 707 MobiDBLite consensus disorder prediction 557 587 - -
Dere01g1809 707 SMART ultradead3 65 268 IPR014001 -
Dere01g1809 707 Pfam Helicase conserved C-terminal domain 277 385 IPR001650 -
Dere01g1809 707 MobiDBLite consensus disorder prediction 499 707 - -
Dere01g1809 707 SMART helicmild6 305 385 IPR001650 -
Dere01g1809 707 MobiDBLite consensus disorder prediction 1 26 - -
Dere01g1809 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 401 IPR027417 -
Dere01g1809 707 Gene3D - 23 254 IPR027417 -
Dere01g1809 707 MobiDBLite consensus disorder prediction 417 463 - -
Dere01g1809 707 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 197 205 IPR000629 -
Dere01g1809 707 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724
Dere01g1809 707 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 280 424 IPR001650 -
Dere01g1809 707 MobiDBLite consensus disorder prediction 469 488 - -
Dere01g1809 707 MobiDBLite consensus disorder prediction 637 653 - -
Dere01g1809 707 Pfam DEAD/DEAH box helicase 70 240 IPR011545 GO:0003676|GO:0005524
Dere01g1809 707 Gene3D - 255 426 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1809 Dere-ChrDere01 31795138 31798767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1809 44 423 Eukaryotic Initiation Factors Gene Family AT3G19760 33.854 6.15e-66 221