Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1778 ATGGACAGCAGAATTGAGTACGGTGAAACTCACAGGAATAAATGTGCAGCATGCTTCAGACAGTTCAACAAAATGGAGCACCTTGTGGAGCACATGAGGATTTCATATCATTCGGCTCACGAACCCACCTGTGGCGTTTGCCGGAAACACAGCAGGTCATTTGAGTCGCTAAGGGAACACCTTATAGGTCCATTGCCAAGACAAGAATGCAGAGATATTTTTGCCAACCGAGGATGCAAGTTTTGCTTGAAGGTCCTTGATAGCCCTTATGCTCGAAGAATCCATCAAGAAAGATGCCAACTTTCTGGAAATGCTGGACTAATTGGTCGTTTTTCAAACTTGGGGATTCGCGATAACTTGACTATTGGAAGAGGGCCACAAGTAGTTGCACTTGCTTGCAAAATGGTTGGAGGAGGCAGTGATGGCTCACTTGATCTCTGTGCAAGAATCTGCATAATTGATGAACAAGAAAACATCATATTCCATTCTTATGTGAAGCCACCAATTCCTGTCACAAACTATAGGTATGAGACGACAGGTATTCGACCAGAATACTTAAGGGATGCAATGCCAATGAGGCAAGTGCAGAGGAAGGTTCAGGACTTCCTCTGCAATGGAGAACCCATGTGGAAGATTCGACCAAGGGGAGGAAAAGCCAGGATTCTTGTAGGTCATGGCCTAGATCATGACCTAGAGTGTTTGCAAGTGGATTATCGCGCAGAAATGATCAGGGACACTGCAAAATACCCACCATTGATGAAAACGAGCAAGCTCAGCAACTCACTCAAGTATGATATCCAAACAGGGATACAGGATCCATATGATGATTGCGTTGCAACAATGAGGCTGTACATGAGGATGAGATCCCAAGTTCACAAAAGAGAAAATTACCCTTTGGCTTCTGACCCTCAAAACAAGAACAACTTTGCTTCATGGAGGCAAAGCGAGCTGGAGAGAATGACCCCCGAACAATTGCTGGAAATCTCGAGGTCTGACTATTACTGCTGGTGCTTGGATTCCATTTAG 1026 0.4483 MDSRIEYGETHRNKCAACFRQFNKMEHLVEHMRISYHSAHEPTCGVCRKHSRSFESLREHLIGPLPRQECRDIFANRGCKFCLKVLDSPYARRIHQERCQLSGNAGLIGRFSNLGIRDNLTIGRGPQVVALACKMVGGGSDGSLDLCARICIIDEQENIIFHSYVKPPIPVTNYRYETTGIRPEYLRDAMPMRQVQRKVQDFLCNGEPMWKIRPRGGKARILVGHGLDHDLECLQVDYRAEMIRDTAKYPPLMKTSKLSNSLKYDIQTGIQDPYDDCVATMRLYMRMRSQVHKRENYPLASDPQNKNNFASWRQSELERMTPEQLLEISRSDYYCWCLDSI 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1778 341 Gene3D - 125 306 IPR036397 GO:0003676
Dere01g1778 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Dere01g1778 341 Pfam Exonuclease 146 258 IPR013520 -
Dere01g1778 341 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
Dere01g1778 341 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 339 IPR047021 GO:0004527
Dere01g1778 341 FunFam RNA exonuclease 4 124 303 - -
Dere01g1778 341 SMART exoiiiendus 127 293 IPR013520 -
Dere01g1778 341 CDD REX4_like 129 284 IPR037431 GO:0006364|GO:0008408
Dere01g1778 341 SUPERFAMILY Ribonuclease H-like 141 289 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1778 Dere-ChrDere01 31517745 31519555 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1778 3 341 C2H2 Transcription Factor Family AT3G27970 72.443 0.0 547