Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1757 ATGGAGTCCGGCCGTCTTTTCTTCGGTCCCTCGGTTTGCCGTGGAAATATGCTGTACCTCGGGAATGGCGATCCCGTTTTTCCAGGAAGATCGATGATAAGCATGGAGGAAAGCTCAAGAAAGCGACCCTTTTTCAGCTCACCGGAGGAACTGTTCGATGAGGAATATTACGATGAGCAGTTGCCAGAGAAGAAGCGCCGCCTCACTCCCGAGCAGGTGCTTCTACTGGAGAAAAGCTTTGAAGAAGAGAACAAACTGGAGCCGGAACGGAAGACCCAGCTGGCCAAGAAGCTGGGATTGCAGCCAAGGCAGGTTGCTGTGTGGTTCCAAAACCGCAGGGCTCGTTGGAAGACCAAGCAACTTGAAAGGGATTACGATGTTCTCAAGTCTTCCTTCGATTCTCTCCTGTCAAAGTATGAATTCATTCTCAAGGACAATGAAAAGCTCAAATCAGAGGTGGTAGCCTTAAACGAGAAGCTTCTAGCTAAAGAGATGCCTGGAGAAGGAGAACCATTACCAGATGAAAAAGCAGACCCATTTCTAATGGAGATAGCCGAAATGTCAACCCTTCCGTTCAACATGAAGGTGGAGGACCATGTGAGTAGTGGGAGTGGTGGAAGTGCAGTGGTTGACGAGGATAGTCCACAGCTTGTTGTGGACAGCGTTGATTCATACTTTCCTGCTGACAACTACGGTGGATGCATGGCCGGAGTCGATAGGGTTCAGTCAGAGGAAGATGATGGCAGTGATGACGGCCGTACTTACTTCCCCGATGTGTTTGTGGCCGCTGAACCTGACCACCAAAACCATGAAGAGGGAGAGGCATTGCGTTGGTGGGTATGGTCTTAA 849 0.4994 MESGRLFFGPSVCRGNMLYLGNGDPVFPGRSMISMEESSRKRPFFSSPEELFDEEYYDEQLPEKKRRLTPEQVLLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSFDSLLSKYEFILKDNEKLKSEVVALNEKLLAKEMPGEGEPLPDEKADPFLMEIAEMSTLPFNMKVEDHVSSGSGGSAVVDEDSPQLVVDSVDSYFPADNYGGCMAGVDRVQSEEDDGSDDGRTYFPDVFVAAEPDHQNHEEGEALRWWVWS 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1757 282 CDD homeodomain 64 120 IPR001356 GO:0003677
Dere01g1757 282 Coils Coil 139 159 - -
Dere01g1757 282 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Dere01g1757 282 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
Dere01g1757 282 Gene3D - 58 129 - -
Dere01g1757 282 FunFam Homeobox-leucine zipper protein HAT5 57 121 - -
Dere01g1757 282 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Dere01g1757 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 53 197 IPR045224 GO:0003700
Dere01g1757 282 SMART HOX_1 62 123 IPR001356 GO:0003677
Dere01g1757 282 Pfam Homeodomain 64 117 IPR001356 GO:0003677
Dere01g1757 282 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Dere01g1757 282 Pfam Homeobox associated leucine zipper 119 160 IPR003106 GO:0006355|GO:0043565
Dere01g1757 282 SUPERFAMILY Homeodomain-like 56 121 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1757 Dere-ChrDere01 31271063 31273101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1757 1 281 Homeobox Transcription Factor Family AT3G01470 57.388 8.19e-95 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere01g1757 Homeodomain 4e-18 CL0123