Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1750 ATGTCTAAGAGGACTTTGCATTGGCCGGCAATAACACCAATTCTACAAAAGAACGAAAGGAAGTGTGATGTTAGTCAATTTGTTTTCTTTCCATCTGGACTACGCACCCCAGTTTCAGAAAGTGCTTTTCGCTATAAAGTTCCAGTAAACACTAAAAGAGCTTGTCTTCAAACTCTTAATAAAACAACTTGGAAGTTATTCCCATTGTGTGCTTTTTCACAAGGCATATGGATGCTTGCTGGAGCAATCATAGCAGTTGTACTGATAATAGTGATTACTGCATACATCTTGTATCGTAGATATTTCAAATCAACCCACACAAAAAATGAAGCATTGGGAGACGTTTTATTGAAGAAAACTGCTTGTCCAAGAGTTCCTCTTAAGGAAGTGTACAGTGCCACAAACCATCTAAATGAAATGAATGTCATTGGTGAAGGAACTTTCGGAAAGGTTTATAGAGGCACAATGACAAATAATCGACATGTTGCAATAAAGCACATCATCAATGATGATGGAAGCATGGAGACTTTAGTCAGGGAAATCACCAGCTTATCGCACGTCAGACACCCAAATCTTGTCGCTTTGTTGGGTTACTGTGTTGCGGGAGATGAATGTTTCCTTGTCTATGAACTATGCCCCAAGGGGAGCCTTTCAGAGTGGCTATTTGGCAAGAACAAGGTCCTGTCCTGGATACAGAGGCTTGAGATTGCAATTGATACTGCTAAAGGTCTTTGGTATTTACATACATATCCAGGAGGCTGCATCGTTCACCGTGACATCAAGCCAACAAACATTCTCCTAGGGCCAAGGTTTGAAGCAAAGCTATCAGATTTTGGACTGTCTAAAGTTATTGAGGTGGGTGAAACATATGTCAGCTCCGAAGTGAGAGGAACTTTTGGATATGTTGATCCTGAGTACCAAAGCAACCGCCATGTAAATTCATCTGGTGATGTCTACAGCTTCGGCATGGTACTTCTACAGATCCTCTCGGGGAAGAAGGTTATAAATTTGAAACTAAGGAAACCCATGTCACTAAATAAAATGGCAAAAGCTCTTAAAAGGGGTGGCAGCGTAACAGAGTTTGCTGATCCTAAACTTCAAGGGGAATACTCAGAAGAAGCATTTGATTTTACCCTTCAACTGGCTCTGTCATGCACAGCCCTTAATCAACCACGTCCATCCATGGAGCAGGTTGTCACAAGATTGGAAGAGGCCCTACTAATTTCGACGAGGAAGGTTTCCACAATAGACACTCCAATGGACGATTCTTCTATTCCATAA 1281 0.4145 MSKRTLHWPAITPILQKNERKCDVSQFVFFPSGLRTPVSESAFRYKVPVNTKRACLQTLNKTTWKLFPLCAFSQGIWMLAGAIIAVVLIIVITAYILYRRYFKSTHTKNEALGDVLLKKTACPRVPLKEVYSATNHLNEMNVIGEGTFGKVYRGTMTNNRHVAIKHIINDDGSMETLVREITSLSHVRHPNLVALLGYCVAGDECFLVYELCPKGSLSEWLFGKNKVLSWIQRLEIAIDTAKGLWYLHTYPGGCIVHRDIKPTNILLGPRFEAKLSDFGLSKVIEVGETYVSSEVRGTFGYVDPEYQSNRHVNSSGDVYSFGMVLLQILSGKKVINLKLRKPMSLNKMAKALKRGGSVTEFADPKLQGEYSEEAFDFTLQLALSCTALNQPRPSMEQVVTRLEEALLISTRKVSTIDTPMDDSSIP 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1750 426 SMART serkin_6 137 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1750 426 Gene3D Transferase(Phosphotransferase) domain 1 212 418 - -
Dere01g1750 426 Gene3D Phosphorylase Kinase; domain 1 99 211 - -
Dere01g1750 426 ProSiteProfiles Protein kinase domain profile. 137 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1750 426 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 64 404 - -
Dere01g1750 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Dere01g1750 426 SUPERFAMILY Protein kinase-like (PK-like) 119 402 IPR011009 -
Dere01g1750 426 FunFam probable receptor-like protein kinase At5g59700 212 420 - -
Dere01g1750 426 ProSitePatterns Protein kinases ATP-binding region signature. 143 165 IPR017441 GO:0005524
Dere01g1750 426 Pfam Protein kinase domain 139 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1750 Dere-ChrDere01 31206280 31208636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1750 129 407 Receptor kinase-like Gene Family AT2G28970 43.206 1.92e-59 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Dere01g1750 Pkinase 4.9e-44 CL0016