Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1743 ATGTTTAATGGGTCTCCGTTTATGATCTGTGGGATGTCAGAAAGCATGTATCATAAGTGGTTTTTTGACCATACCCACTTGAAAATGTCTTGGATTCACCATCAAATCCAGCAAAAAGATGGTTACTTGAGCTACCCACCGCCAGTTTTGCCTTCATCATCGCCCCCATACCCCGGTGCTTTCCACAAAGAAACAGTGTCTTCTTCATCATCTTCACCTTCGTCTGGTACTAGAATTAGTCCGGCTGTTCTTTTCATTATAGTGATTCTAGCCGTACTCTTTTTTATTTCTGGTCTTCTACACCTGCTTGTTAGATTTCTCATAAAGCACCCGTCCTCCTCGGCATCTGAATCTAATAGACCCCAAGAAATCTCAACCTCTGATGCTCTTCAAAGACAACTTCAACAGCTTTTCAATCTTCATGACTCTGGTCTGGATCAAGCTTTCATCGATGCACTTCCTGTTTTCCAGTATAAAGAGATAGTGGGTCTGAAAGAGCCGTTTGACTGTGCTGTTTGTCTCTCTGAATTTTCTGAGAAGGACAAGCTCAGATTGCTCCCAATGTGCAGTCATGCCTTTCATATCAATTGCATAGACACATGGCTTCTATCCAATTCCACATGTCCACTTTGTAGAGGAACCCTTTTAACTCCAGGGTTTTCAATAGAAAACCCAATATTTGATTTTGATGATTTAAGGGAAGAGGATGGATGTAATGGAGAAAATGGATTTACAGCCACTAGACAGAAAACAGTTGGAATTGAAGAAACTCTAGAGAAAGGGGTATTCCCTGTAAAACTTGGTAAATTTAGAAGGTTGAATGTGGAGGCAGGGGAGACTGGAGGAGGAGAGACTAGTAGTAGTAATTTAGATGCGAGAAGATGTTACTCAATGGGATCTTACCAGTATGTGCTTGGGAATTCAGAACTCCGAATTACCTTAAACCATGACCAACATGGTCAGGATAGAAGGCTGACGAAAGGACCAGAACACTCCGAGAAGCTCGCAATGGAGGAAGGAAAGAATATTAGAAGTGTGAGCAAAGGTGAGAGCTATTCTGTTTCCAAGATCTGGCAGTGGTCCAAGAAGGGCAAGTTTTCTAGTTCTTCCGATGATCAAATGGGTATGCCATCTTCTCTAAATGCAGACTTACCATGGATGAGGAAAACAGAAGGGACATGA 1182 0.4205 MFNGSPFMICGMSESMYHKWFFDHTHLKMSWIHHQIQQKDGYLSYPPPVLPSSSPPYPGAFHKETVSSSSSSPSSGTRISPAVLFIIVILAVLFFISGLLHLLVRFLIKHPSSSASESNRPQEISTSDALQRQLQQLFNLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLSEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRGTLLTPGFSIENPIFDFDDLREEDGCNGENGFTATRQKTVGIEETLEKGVFPVKLGKFRRLNVEAGETGGGETSSSNLDARRCYSMGSYQYVLGNSELRITLNHDQHGQDRRLTKGPEHSEKLAMEEGKNIRSVSKGESYSVSKIWQWSKKGKFSSSSDDQMGMPSSLNADLPWMRKTEGT 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1743 393 SMART ring_2 170 211 IPR001841 -
Dere01g1743 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 74 358 - -
Dere01g1743 393 MobiDBLite consensus disorder prediction 315 340 - -
Dere01g1743 393 SUPERFAMILY RING/U-box 149 218 - -
Dere01g1743 393 CDD RING-H2_EL5-like 169 212 - -
Dere01g1743 393 FunFam RING-H2 finger protein ATL46 132 217 - -
Dere01g1743 393 Pfam Ring finger domain 169 212 IPR001841 -
Dere01g1743 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 217 IPR013083 -
Dere01g1743 393 ProSiteProfiles Zinc finger RING-type profile. 170 212 IPR001841 -
Dere01g1743 393 MobiDBLite consensus disorder prediction 362 377 - -
Dere01g1743 393 MobiDBLite consensus disorder prediction 362 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1743 Dere-ChrDere01 31152171 31153352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1743 68 370 C3H Transcription Factor Family AT2G18650 43.787 3.01e-60 199