LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere01g1742	ATGATTAGCACAGGGCTGTTCTATGGCGTAGACAACTTCAACACTGGGAAAAAAACAACCCAAGAGTTCGGATCAAATCTTATCATCATATCAGCCTCAATGGAAAGAATTCCTATGTGGGTAGTCCTCGTTTCATGTCTCTTCCTCCTTGACATGACAAACTGCGTGGAGGACGAGGTAAAGAGCACAATGATAAGCTTCCTTGCGAAACTCGCTTCTAACAGTGGCCAACAGAATATTTCTCCTTTGAATTGGAAGCCAGACTCTGATCCCTGCAAGGACCACTGGCACGGCGTAATCTGCGACATTCGAAATGTAACAGTGCGGAGGCTATTTCTTGACAGGTTGAATTTAGCTGGAACTCTAGATGTTGCTATGCTCTGCAACTTTCAACCTCTTGCTGCTTCTTTAATCATTCTCAGTCTTGATGGAAACAACATCAGTGGAGGAATAACAGCTGAGATTGGAAACTGCAAACAGCTAACTCGCTTGCATGTGAGTGGAAATCAACTTTCAGGGGAACTTCCAAGTTCACTTGCCTTGTTAGATAATCTGAAAAGACTTGACATTTCCAACAATAAGTTTTCCGGTCACTTGCCAGACTTGTCCAGAATCTCAGGGCTGAATGTGTTCCTTGCCCAGAACAATCAGCTCAGTGGGGAGATACCGGGGTTTGATTTCTCCAACCTCATTCGATTCAATGTTTCATTTAACGATTTCAGTGGCCGAATACCAGATGTGCATGGCCATTTCTTTGAAGACAGCTTCTTCGGTAATCCTGAACTGTGTGGAGAACCATTGCAGAAAAACTGTTCTGCTGTGCCTCCTGATGACAAATCAGTAGGAGCAACTGAATCAAATGGATCAAAGGAATCAAAGGGTGCTTCCAAAGATCAGATTCTAATGTATTCAGGATATGTTGCATTGGGTTTGGTATGTATCCTTTTCATAGTCTATAAACTGTGTACAAGAAAGAACACAAGAAAGGCTGAAGCAGCAAATAACTCAGCAGCAAGTGACCATGATGGGCCTGACAAACCAAGCAACGCTTCAAGTGAACAAAAATCAGGGATAAGCAGATCTGAGTATTCAGTGAATTCTGAAAGTGGGATGATTTCACAATCACTTATAGTTCTTACACAACCGGTGGCAAGTGAATTGAAACTTGAGGACTTGCTGAGGGCCCCAGCGGAATTGCTTGGCAGAGGAAAGTACGGTAGTCTTTATAAGGTGATGCTGGACAACGCCAAGACAGTAGTTGTGAAAAGGATTAAGGACTCGGCTACTTCCAGCCATGACTTCAGGCAAAGAATTGAGACTCTGAGTCAAGTGAAGCACCCAAATGTACTGTCACCACTTGCTTTCTATTGTTCCAATCAAGAGAAGCTTCTGGTCTATGAATTTCAGGAAAATGCAAGTTTATTCAAGCTTCTCCATGGAGGGTCAAAAGGATTTGACTGGACCAGCAGGCTTGGAATTGCTGCTACTATTGCAGAGGGATTAGCTTTCATGCATCAAGAGCTTGAGGAAAAAGGCATTGCACATGGTAACTTGAAATCCTCCAACATTCTGCTAGGCCATAATATGGAGGCACGCATAAGCGAATACGGTGTGATGCTCATGGAAGATGAACAAAGCTCATCTTTTGCAAGTCCTCATCCTTCTGGTGCAGCAAATGCCTTCAAAGCAGATGTGTATGGGTTTGGTGTTATTCTTCTCGAACTACTTACAGGGAAGCTAGTGAAGAGCGATGGGGTTGACTTGACGGAGTGGGTTAAGTCTGTTGTGAGGGAAGAATGGACTGGTGAGGTGTTTGACAAGAAGCTGATATCAGACTCTGCGAGTGAAGAGAGGATGGTGAATTTGCTTCAGGTGGCTATAAAGTGTGTTCATCGTTCTCCAGAGGCAAGGCCAAGTATGAACCAAGTTGTTCTCATAATTAACACTATAAAAGAGGAAGAAGAAAAGTCATTGATGTATGAAGCGTGA	1989	0.4339	MISTGLFYGVDNFNTGKKTTQEFGSNLIIISASMERIPMWVVLVSCLFLLDMTNCVEDEVKSTMISFLAKLASNSGQQNISPLNWKPDSDPCKDHWHGVICDIRNVTVRRLFLDRLNLAGTLDVAMLCNFQPLAASLIILSLDGNNISGGITAEIGNCKQLTRLHVSGNQLSGELPSSLALLDNLKRLDISNNKFSGHLPDLSRISGLNVFLAQNNQLSGEIPGFDFSNLIRFNVSFNDFSGRIPDVHGHFFEDSFFGNPELCGEPLQKNCSAVPPDDKSVGATESNGSKESKGASKDQILMYSGYVALGLVCILFIVYKLCTRKNTRKAEAANNSAASDHDGPDKPSNASSEQKSGISRSEYSVNSESGMISQSLIVLTQPVASELKLEDLLRAPAELLGRGKYGSLYKVMLDNAKTVVVKRIKDSATSSHDFRQRIETLSQVKHPNVLSPLAFYCSNQEKLLVYEFQENASLFKLLHGGSKGFDWTSRLGIAATIAEGLAFMHQELEEKGIAHGNLKSSNILLGHNMEARISEYGVMLMEDEQSSSFASPHPSGAANAFKADVYGFGVILLELLTGKLVKSDGVDLTEWVKSVVREEWTGEVFDKKLISDSASEERMVNLLQVAIKCVHRSPEARPSMNQVVLIINTIKEEEEKSLMYEA	662

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere01g1742	662	Pfam	Protein kinase domain	398	644	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere01g1742	662	SUPERFAMILY	Protein kinase-like (PK-like)	397	645	IPR011009	-
	Dere01g1742	662	Gene3D	Transferase(Phosphotransferase) domain 1	470	661	-	-
	Dere01g1742	662	MobiDBLite	consensus disorder prediction	268	294	-	-
	Dere01g1742	662	ProSiteProfiles	Leucine-rich repeat profile.	184	206	IPR001611	GO:0005515
	Dere01g1742	662	MobiDBLite	consensus disorder prediction	330	363	-	-
	Dere01g1742	662	Gene3D	Ribonuclease Inhibitor	54	249	IPR032675	-
	Dere01g1742	662	FunFam	LRR receptor-like serine/threonine-protein kinase ERECTA	129	222	-	-
	Dere01g1742	662	PANTHER	OS05G0588300 PROTEIN	40	652	-	-
	Dere01g1742	662	MobiDBLite	consensus disorder prediction	349	363	-	-
	Dere01g1742	662	SUPERFAMILY	L domain-like	87	263	-	-
	Dere01g1742	662	ProSitePatterns	Protein kinases ATP-binding region signature.	400	422	IPR017441	GO:0005524
	Dere01g1742	662	ProSiteProfiles	Protein kinase domain profile.	394	650	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere01g1742	662	Gene3D	Phosphorylase Kinase; domain 1	362	468	-	-
	Dere01g1742	662	Pfam	Leucine rich repeat N-terminal domain	65	102	IPR013210	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere01g1742	Dere-ChrDere01	31146154	31149271	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere01g1742	63	651	Receptor kinase-like Gene Family	AT1G68400	35.368	7.40e-99	315

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-III	Dere01g1742		Pkinase	1.9e-26	CL0016