Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1741 ATGGGAGTGAAGGGTCTCTGGGAACTACTCGCTCCCGTTGGTCGCCGGGTCTCCGTCGAGACCCTAGCCGGCAAGAAGCTTGCCATTGATGCAAGCATATGGATGGTACAGTTTATGAAGGCGATGCGGGACGAGAAGGGGGAAATGGTTCGCAATGCCCATTTGCTCGGCTTCTTTCGCCGAATTTGCAAGCTCTTGTTCCTGCGGACTAAGCCTGTTTTTGTCTTCGATGGCGGCACCCCGGCTCTCAAGCGACGGACCGTGATTGCGCGTCGGAGGCAGCGGGAAAATGCTCAGGCCAAAGTTCGAAAGACTGCCGAGAAATTGCTTCTTAATCATTTAAAGGCATTGAAATTGAAAGAATTGGCGAATAATGTTAAGAACCAGAGACTGAAGCAGAATACTGATGCTAAGGGTCAGAAAAAATCAGATCAGATGGACTTGGCTGGTTTTGATTTAGGAAGCAACCATGTGAAAGAGCTACAAAAAAAATCTGGAGCTGAATTTACTGCTGAGTTGGACAATAATTTATCCCAGACTATGGTATCAAGAAGTTGCAATCAAGAGGAGCTTGATGCAATGTTGGCAGCATCAATTGTTGCAGAGGAAGATGGATTATTAGCCAGCAAAGTGGCATCTGGGGCAGTTAATCATTCTGAGGAAGAAGGTGATACAGATGTAGAAATAATACTGCCAGAGTTAAATGCTGAAGTTGATCCCTCTGTGTTAGCTGCTTTGCCCCAATCAATGCAACTTGATATTCTCTCTCAGCTTAAAGGGAAAAAGATAGAAGAACTGCTGAAGGATCATGACAATAAAAAACGATATGAGGTCAATGATAAGGACAAGGGCAAGGGGAAGGGAATTCTGTTGCATGAAATTAACGCAGTAGGATGTAACTCAGGAAGTGATGATATGATATCAATGAAACACAATCAGGACAAAGTGGATGAGATGTTGGCCGCATCTATTGTGGCAGAGGAAAATGAGAAGTTAGTCAACAATGCATCAACATCTGGTGGGGCTTTCATCTCTCATGAAGAGGATGACCTTTATGATGAAGATGAAGAGATGATCCTGCCAGCAATGCATGATAAGGTTGATCCTGCTGTTCTAGCGTCTTTGCCTCCATCAATGCAACTTAACCTTCTTGGTCAGATGAGAGAGCGACTTATTGCAGAAAACAGACAGAAGTATCAGAAAGTAAAGAAGGATCCTTTGAAATTCTCTGAGCTACAAATACAGGCTTACCTTAAAACCGTTGCATTCCGTCGGGAGATAAATGAAGTGCAGAAAGCTGCTGCAGGGGGAGGAGTAGGCGGTGTACAGACTTCACGTATTGCATCTGAAGCCAACAGACAATACATATTTTCAACATCTTTTACTGGTGATAAACAAGCACTTACCTCTACCAGATTAGAGAAAAATAAAGATACACAACAGAAGACACCAAGAAACCATCTTTCACAGGGTTTTGTGAATAGCACTGAGCCTGCTAATGATTCTAGTACTTCAAGTGGATTAGTTCACGATGAACCTGGAAGGCCATCTGACGAGAGTATCCAAACATATCGAGATGACAGGGGCCAATTTCGAGTGAGTAGGCTTAGAGCAATGGGGATGCGTATGACCCGTGATATACAAAGAAATTTGGATTTGATGAAGGAGATTGAGCAGGACAGAACAGATGCAAACAAAGCTGCAAATATTAACACAATTCTTGCCAGGGAGAAAAATGTTGCATCATTAAGTTCTAACAACTTGCTTGTTGGTACGTCAGACAAGATAAATGTTGATTTAGTTGGGGAGAATTTGAGAGATGAGCACTCTATGTTAGCAGGTGATGCTTCTATAGAGATATCCTTCATGGATGATGGTGAGAATAAGTGTCTTGATGATGATGATGATGATTTATTTGCTAGTCTAGTAGCAGGTAATTCAGGGACAATTTCATGTGCTGACAATACCTCATTGAAAGAACAAGTCTCTGATTCTAGTTCAGACTGTGACTGGGAAGAAGGAATAACTGAAGGTAAGAACGATGTTTTTTCTGGTGATGTTATCATGGAAATGAAGCCATCTGTTGCAAAAGATAATTGTAGTGATGAGTGTGATGTAGAATGGGAGGAAGGAGTTTGTGATGGTGCTAATAGAAGTTTGTGCACAGCTGTGCCAGGAAAAATAGCATCTCGAGGTTGCTTGGAAGAGGAGGCTGATTTGCAGGAGGCAATACGGAGAAGTCTTGAGATCATGGGGGACCAGGAACTTAATTGCACACCATCCAGATATAAGCATTTGAATGCTGGTGAGGATAAATCCGATTATGCATTAAACCAAGATGATAATTTGGTTGGTTCTGGAGTGAAGGATATTCATGGCAATATTGGAGCACTGAATAGAGACAGTAGTATGGGTGAGTCCACTTTGCAAAGAGAAGATAGTACTGAACAGTGCGAATCTCATTATAAAATTTTAGATGACAAGCTGGATAGCACAGCAAGAAATACCCAACAAACTTCCCAGTCTCCTGGGGGACATTCAGGGTCATCTGCTGCATTTGATTCTGAGAAGACAGTGACTTCTATTAAGAAGCCTTGTACAATGGGAATGGGATCTCATTCTGAAGATTTATTGTCCAATGCAAATGAAAGGATGAGGAATGAGGGCCACATGGTTGCAGAGCAATTCTTGGGCACCTTTAATGAAGATAGTAGGGGGACTACTAATTGTGACAAGTCTCTAGTGGTTGACTCCCTTGGTGCTTCAGAAAAGGAGGAAAGTAGTAATGAAGTTGAACCTTTCGGTAATTCTTCTGAGATGCACAAGCCTGTTGCTCCTTTTGTGGAGTCATCCTTGGAAGGAGTAACAGAAGACCTTGACACTCAGCCAGAGTTGCCTAGAGAGAACAACTGTGGAAGCTTTGAGGAAAGGAAGAGTAACCTCGGCAGAGATGCAATGAAGGCCCCTGTTTATTTGTCTGCAGAAAACCTCACCATTCGGCCAGAGTTGCCTATAGAGGACAACCACAGAAGCTTTGAGGAAAACATGAGCAACCTTGGCAAAGATGCAATGAAGAGCCCAGGTAACTTGTCTGCAAAAGCAGTTGAGGGTAGTTTGGAGGAAGAAATTCGAATTCTAGGTCAAGAATATACCAACCTAGAAAATGAGCAGAGGAAGCTTGAACGAAATGCAGAATCTGTCAACAGTGAATTGTTCACTGAATGTCAGGAACTATTGCAAATGTTTGGCTTGCCGTATATTATTGCTCCAATGGAAGCAGAAGCACAATGTGCTTATTTGGAACTTGCAAAACTGGTGGATGGTGTTGTGACTGATGATTCTGATGTCCTTTTATTTGGGGCATGTAGTGTCTACAAGAATATATTTGATGACCGCAAATATGTAGAGACATACTTTATGGAGGACATTGAGAAGGAGCTTGGCTTGACCAGAGAAAAATTGATACGCATGGCACTGCTTCTGGGGAGTGATTATACTGAAGGCATAAGTGGAATTGGAATTGTAAATGCTATTGAGGTTGTAAATGCGTTCCCTGAGGAAGATGGCCTTCTGAAATTCCGGCAGTGGGTGGAGTCACCAGATCCCACCATCTTTGGAAAGTTTAATACCAAAAGTGGATCCAATGCCAGAAAGAGAGGGTCAAAAGTTGAAGAAAATGTTAATTGCCCAAATGGAAATATAGAAGAGACTATGGTAGACCAAAATGTTTCCTGTACTCAGGAACAAAATGATTCATCAGACTACCTCCAAGAAATAAAGCAGATTTTTATGGATAAACATAGAAATGTGAGCAAGAATTGGCATATTCCTTCTTCTTTTCCAAGTGAAACAGTTATGTCTGCTTACTCTTGTCCACAAGTGGACAAGTCAACTGATCCATTTGCATGGGGAAAGCCAGATCATCTTGTTCTTCGCAAGTTGTGCTGGGAGAAATTTGGGTGGACTAGCCAGAAAGCAGATGAATTGCTGTTACCTGTTTTAAAGGAATATAACAGGAATGAGACTCAACTGCGATTGGAAGCATTTTATTCTTTCAATGAAAGATTTGCAAAAATCCGTAGCAAGAGAATTAAGAAAGCTGTGAAAGGAATCACTGGCAATCAGTCTTCAGAGTTGGCAGATGAATCTGCAGAGGACTTGTCCAAGAGTAGGAAAAATGGAACAGGAAGTACCGCTGAAGTTGGGATTAACAGATCTGAGACTTCTAAGGGAACAGAAGATAGTCTTGCTGACATGAAGCAAATAAATTTAAAACAGTCTAGGAAAAGGAAGAATTCTAGAGATAGTGTTGCTGAGATACGATCAAGGAAAAAGGGAAGCTTGAGTGCTCCTGCCTCAGCTTCTGGTCTATCTGAGGTTGATGTGCAAACGGGAGAAGAGCCAAGTAAAGGTGGTTTGAGTTGGAACAGAAGTGGCAAAGGCAGAGGCAGAGGTGTGAGAGTTCAAAGAGTAAGGGGAAAGAGGAGTCTTGACTTTGATTCATCTGAAACTACATCTAGTGATAGTGGCAGTGATGACCATGAGCCCACAGCTCATGATAAGAACTCAAGAGGGCCGCAAGAGGTGCGAAGGTCTTTGCGATCTCGGAAGATGGTCAACTATGCCATGAAGGACATTGAAATTGAAAGCACTGATGACTTGTTTGATCAGAGCAATAAGGCAGACTTGAATGAACAGCCAATAGATGAAACATTATCTCGTACGCATGGTGCCTGTGGAGATGCTAACACCAGTTTCAGCAGAAATGAAGAAAGCATGATAAATCTTTCTCCAAAGAAGGATTTGTCTAGAAACTTTCTTGAATCCGGAGGCAGATTTTTCGCAGATGAAGATGACACTAGTCATCCTGAAACCAGTAATTATGATAGTACTGTGGATGCTGACTACCTTAAAGTGGGTGGTGGATTTTGCCTAGATGACGATGAGAGGGGTAGCAAACATAATGAAATTCATGGCAACACGACGGCTATAGTAGAGAATAGTGCAGAAGTTACACATTGTTCTAGTTTTATGGATGATGCTGACAATGATAAAAATACTACTTATCAGCTCAGTTCAGTGAATAAAAGTTCTGGAGTTGAACTACAAGATAGAGGGACGGCTACACACGAGATTGAGTTGAATCAGGACCATGTAAATACTAGAAGTAATTATGATCAGTCTCAGGTTGACAAGGAGGTCTGGATACCAGAGAATGCTCATGACGATACGAAAAATCCCATGGCAGCATTTAATGCCATACCTTTTCTAAGAAAGAAAAAGAGGAAGAGCTAA 5295 0.42 MGVKGLWELLAPVGRRVSVETLAGKKLAIDASIWMVQFMKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKLLLNHLKALKLKELANNVKNQRLKQNTDAKGQKKSDQMDLAGFDLGSNHVKELQKKSGAEFTAELDNNLSQTMVSRSCNQEELDAMLAASIVAEEDGLLASKVASGAVNHSEEEGDTDVEIILPELNAEVDPSVLAALPQSMQLDILSQLKGKKIEELLKDHDNKKRYEVNDKDKGKGKGILLHEINAVGCNSGSDDMISMKHNQDKVDEMLAASIVAEENEKLVNNASTSGGAFISHEEDDLYDEDEEMILPAMHDKVDPAVLASLPPSMQLNLLGQMRERLIAENRQKYQKVKKDPLKFSELQIQAYLKTVAFRREINEVQKAAAGGGVGGVQTSRIASEANRQYIFSTSFTGDKQALTSTRLEKNKDTQQKTPRNHLSQGFVNSTEPANDSSTSSGLVHDEPGRPSDESIQTYRDDRGQFRVSRLRAMGMRMTRDIQRNLDLMKEIEQDRTDANKAANINTILAREKNVASLSSNNLLVGTSDKINVDLVGENLRDEHSMLAGDASIEISFMDDGENKCLDDDDDDLFASLVAGNSGTISCADNTSLKEQVSDSSSDCDWEEGITEGKNDVFSGDVIMEMKPSVAKDNCSDECDVEWEEGVCDGANRSLCTAVPGKIASRGCLEEEADLQEAIRRSLEIMGDQELNCTPSRYKHLNAGEDKSDYALNQDDNLVGSGVKDIHGNIGALNRDSSMGESTLQREDSTEQCESHYKILDDKLDSTARNTQQTSQSPGGHSGSSAAFDSEKTVTSIKKPCTMGMGSHSEDLLSNANERMRNEGHMVAEQFLGTFNEDSRGTTNCDKSLVVDSLGASEKEESSNEVEPFGNSSEMHKPVAPFVESSLEGVTEDLDTQPELPRENNCGSFEERKSNLGRDAMKAPVYLSAENLTIRPELPIEDNHRSFEENMSNLGKDAMKSPGNLSAKAVEGSLEEEIRILGQEYTNLENEQRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELAKLVDGVVTDDSDVLLFGACSVYKNIFDDRKYVETYFMEDIEKELGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLLKFRQWVESPDPTIFGKFNTKSGSNARKRGSKVEENVNCPNGNIEETMVDQNVSCTQEQNDSSDYLQEIKQIFMDKHRNVSKNWHIPSSFPSETVMSAYSCPQVDKSTDPFAWGKPDHLVLRKLCWEKFGWTSQKADELLLPVLKEYNRNETQLRLEAFYSFNERFAKIRSKRIKKAVKGITGNQSSELADESAEDLSKSRKNGTGSTAEVGINRSETSKGTEDSLADMKQINLKQSRKRKNSRDSVAEIRSRKKGSLSAPASASGLSEVDVQTGEEPSKGGLSWNRSGKGRGRGVRVQRVRGKRSLDFDSSETTSSDSGSDDHEPTAHDKNSRGPQEVRRSLRSRKMVNYAMKDIEIESTDDLFDQSNKADLNEQPIDETLSRTHGACGDANTSFSRNEESMINLSPKKDLSRNFLESGGRFFADEDDTSHPETSNYDSTVDADYLKVGGGFCLDDDERGSKHNEIHGNTTAIVENSAEVTHCSSFMDDADNDKNTTYQLSSVNKSSGVELQDRGTATHEIELNQDHVNTRSNYDQSQVDKEVWIPENAHDDTKNPMAAFNAIPFLRKKKRKS 1764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1741 1764 FunFam DNA repair protein UVH3 1029 1148 - -
Dere01g1741 1764 SUPERFAMILY PIN domain-like 2 1164 IPR029060 -
Dere01g1741 1764 CDD PIN_XPG_RAD2 1066 1150 - -
Dere01g1741 1764 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 259 - -
Dere01g1741 1764 MobiDBLite consensus disorder prediction 958 979 - -
Dere01g1741 1764 FunFam DNA repair protein UVH3 1149 1206 - -
Dere01g1741 1764 Gene3D - 1 163 - -
Dere01g1741 1764 MobiDBLite consensus disorder prediction 1370 1536 - -
Dere01g1741 1764 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Dere01g1741 1764 MobiDBLite consensus disorder prediction 919 942 - -
Dere01g1741 1764 Coils Coil 1036 1070 - -
Dere01g1741 1764 MobiDBLite consensus disorder prediction 827 872 - -
Dere01g1741 1764 SMART xpgineu 1080 1149 IPR006086 GO:0004518
Dere01g1741 1764 MobiDBLite consensus disorder prediction 1448 1462 - -
Dere01g1741 1764 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Dere01g1741 1764 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Dere01g1741 1764 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Dere01g1741 1764 Gene3D - 226 264 - -
Dere01g1741 1764 MobiDBLite consensus disorder prediction 1390 1422 - -
Dere01g1741 1764 FunFam DNA repair protein UVH3 1 147 - -
Dere01g1741 1764 CDD PIN_XPG_RAD2 2 92 - -
Dere01g1741 1764 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Dere01g1741 1764 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Dere01g1741 1764 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Dere01g1741 1764 Pfam Ubiquitin binding region 235 257 IPR025527 -
Dere01g1741 1764 Pfam Ubiquitin binding region 367 390 IPR025527 -
Dere01g1741 1764 MobiDBLite consensus disorder prediction 512 528 - -
Dere01g1741 1764 SMART xpgn3 1 98 IPR006085 GO:0004518
Dere01g1741 1764 MobiDBLite consensus disorder prediction 794 815 - -
Dere01g1741 1764 Gene3D - 1149 1265 - -
Dere01g1741 1764 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1149 1358 IPR036279 -
Dere01g1741 1764 MobiDBLite consensus disorder prediction 483 510 - -
Dere01g1741 1764 MobiDBLite consensus disorder prediction 1423 1442 - -
Dere01g1741 1764 ProSitePatterns XPG protein signature 2. 1083 1097 IPR019974 GO:0016788
Dere01g1741 1764 MobiDBLite consensus disorder prediction 468 528 - -
Dere01g1741 1764 MobiDBLite consensus disorder prediction 960 979 - -
Dere01g1741 1764 CDD H3TH_XPG 1152 1296 - -
Dere01g1741 1764 SMART HhH_4 1151 1184 IPR008918 GO:0003677|GO:0003824
Dere01g1741 1764 MobiDBLite consensus disorder prediction 831 872 - -
Dere01g1741 1764 Gene3D - 1021 1148 - -
Dere01g1741 1764 Pfam XPG I-region 1083 1164 IPR006086 GO:0004518
Dere01g1741 1764 MobiDBLite consensus disorder prediction 1491 1536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1741 Dere-ChrDere01 31119883 31133106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1741 1074 1181 Core DNA Replication Machinery Family AT5G26680 37.838 6.62e-13 70.9