Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1725 ATGGAATCTCCGGTACGCGCTTTTGACGAACTTTACAAACAGACAAAAACCATGGAGCTACAGGAGAGTATGAAGTTCGTGATCCAGAGACCCGTACATAAGAAATGGGCTTTTCATAAAGCAACAGAAGCAGAGAAATTCGCCGACGCCGTCACTCCCCGGCGAAAATGGAAGATCTTCCACAGGTCATCGTCTGCCATCCCTTCAAAACAATCAAAAACCCAAAAGAAACAGCCCCCAGAAGAATTTCTCTGTCCCATATCGGGGTCTCTCATGGCAGACCCCGTCATCGTCTCCTCAGGCCACACCTTCGAGCGAGTCTCTGTTCAAGCCTGTAAAAATTTGAACTTTACACCGCTTCTCTCCGACGGCTCCACGCCCGATTTCTCTACAGTAATTCCCAACCTTGCCCTTAAATCTGCCATTGCTAAATGGTGCCAGAACTCCTCCAATCTCCCTTCCGAGCTACCTGATGTAAATTCTGTTGAGAAGCTCGTTCATACACTAATGGCGAAGACCCAGAAGCCAGAACCAAGTGCCCAGAACAAAACAGAGGCGCAGAAGGTAGTAATTACAGAGACAGAGCTGATTCAAGGGATGAAGGAAAGCCCTCCTGTGAGTTTCAATCACGCATCGACTGAGGTTACTCGACGCCCAACCCATTTCTACTCGAGCTCAGAGGAATCGGTGTGTACCTCTGCTTCAACTCCGCCTCTGCAACTTTCAACACGACCGAGCTGCTATTCTTCTCCTTCATCTTCAGAACTCGAAGTCGTAACTCCTAGCTCACCCGAGGAAGAAGAAATCATGGCGAAATTGAAAAGCTCACAAGTGTTCGAGATCGAAGAAGCCGTGGTTTCACTGAGAAAGCTGACGAAAACCAGAGAGGACACGAGGGCCCATCTCTGCAGTCCTAGGTTACTCTCCGCCCTACGATCCTTAATCGTGTCCAAGTACACCAATATTCAGGTGAACGCGGTCGCGGCTCTAGTGAATCTCTCATTGGAGAAAGTGAACAAAGTGAAGATCCTACGCTCCGGAATCGTTCCCCCATTGATCGACGTATTGAAGGGAGGATCCCCTGAGGCTCAGGAACACGCTTCCGGTGCGCTCTTCAGCTTGGCCCTCCACGACGACAACAAAACTGCAATCGGCGTGCTGGGTGCTCTGCCTCCGTTGCTCCACTTGCTCCGGTCGGAGAGCGAGCGAACTCGGCAGGACTCGGCGCTCGCACTGTACCACCTCTCTCTGGTACAGAGCAACCGGACCAAGCTGGTGAAACTCGGGTCAGTTCCGATCCTAATGAGCATGGTGAAGTCGGGTCAAATGACAGGTCGGGTTCTCCTCATACTATGCAGCCTGGCGTCGTGTGGGGAGGGGCGGGCGGCGATGATGGATGCGGGTGCGGTGGAGTGCATGGTGGGGCTGTTAAATGGGAGCGAGTTGGGTTCCGGGTCGACCCGGGAAAGCTGCATGGCGGTGCTGTATGCGCTGAGTCACGGCGGGTTGAGGTTCAAAGCGGTGGCGAAGGCGGCGGGGGCGATGGAGGTGCTGAGGAAGTTGGAGAAGACGGGAAGCGAGAGGGCGAGAGAAAAGGTGAGGAGGATATTGGAGATGATGAGGGTGAAGGAGGAAGAGGAAGGGGAGGACGTAGATTGGGAGGCGCTTCTTGACTCGGGTCTGAGTAGTCGGAGTCGGGTTCGGTGCGGTCCCGGGTTGGACGAGTCCACTGCTAACTCGTCCGAGTTTTGA 1752 0.5348 MESPVRAFDELYKQTKTMELQESMKFVIQRPVHKKWAFHKATEAEKFADAVTPRRKWKIFHRSSSAIPSKQSKTQKKQPPEEFLCPISGSLMADPVIVSSGHTFERVSVQACKNLNFTPLLSDGSTPDFSTVIPNLALKSAIAKWCQNSSNLPSELPDVNSVEKLVHTLMAKTQKPEPSAQNKTEAQKVVITETELIQGMKESPPVSFNHASTEVTRRPTHFYSSSEESVCTSASTPPLQLSTRPSCYSSPSSSELEVVTPSSPEEEEIMAKLKSSQVFEIEEAVVSLRKLTKTREDTRAHLCSPRLLSALRSLIVSKYTNIQVNAVAALVNLSLEKVNKVKILRSGIVPPLIDVLKGGSPEAQEHASGALFSLALHDDNKTAIGVLGALPPLLHLLRSESERTRQDSALALYHLSLVQSNRTKLVKLGSVPILMSMVKSGQMTGRVLLILCSLASCGEGRAAMMDAGAVECMVGLLNGSELGSGSTRESCMAVLYALSHGGLRFKAVAKAAGAMEVLRKLEKTGSERAREKVRRILEMMRVKEEEEGEDVDWEALLDSGLSSRSRVRCGPGLDESTANSSEF 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1725 583 Pfam Armadillo/beta-catenin-like repeat 378 416 IPR000225 GO:0005515
Dere01g1725 583 Pfam Armadillo/beta-catenin-like repeat 339 375 IPR000225 GO:0005515
Dere01g1725 583 SUPERFAMILY RING/U-box 70 151 - -
Dere01g1725 583 SUPERFAMILY ARM repeat 268 540 IPR016024 -
Dere01g1725 583 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 388 430 IPR000225 GO:0005515
Dere01g1725 583 SMART arm_5 377 417 IPR000225 GO:0005515
Dere01g1725 583 SMART arm_5 457 500 IPR000225 GO:0005515
Dere01g1725 583 SMART arm_5 295 335 IPR000225 GO:0005515
Dere01g1725 583 SMART arm_5 336 376 IPR000225 GO:0005515
Dere01g1725 583 Pfam U-box domain 80 149 IPR003613 GO:0004842|GO:0016567
Dere01g1725 583 PANTHER U BOX DOMAIN-CONTAINING 63 541 - -
Dere01g1725 583 ProSiteProfiles U-box domain profile. 78 152 IPR003613 GO:0004842|GO:0016567
Dere01g1725 583 SMART Ubox_2 82 145 IPR003613 GO:0004842|GO:0016567
Dere01g1725 583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 156 IPR013083 -
Dere01g1725 583 Gene3D - 263 539 IPR011989 -
Dere01g1725 583 Coils Coil 526 546 - -
Dere01g1725 583 FunFam RING-type E3 ubiquitin transferase 60 152 - -
Dere01g1725 583 MobiDBLite consensus disorder prediction 563 583 - -
Dere01g1725 583 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 347 384 IPR000225 GO:0005515
Dere01g1725 583 MobiDBLite consensus disorder prediction 233 258 - -
Dere01g1725 583 FunFam RING-type E3 ubiquitin transferase 264 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1725 Dere-ChrDere01 31006737 31008488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1725 28 583 U-box Gene Family AT5G40140 55.124 0.0 561