Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1703 ATGGTGGTAGAGATGAAGAGAACAAGGGATGATGTCTATGCTTGTTCTGGCTCTGGCTCTCAATTTAAGCGAACCATTTGCTCCTCACGCGGGGATTCCTATGGCCAATCCCATGTCCCTGGAGGAGGAGCAGCAGCAGATGTTGGCGGTAATATTGGAGGAGAGGGAGCTACTTCGCCAAAGTTGACTACTATCGATGCCTTATCCTATTTAAAGGAAGTGAAAGAAATGTTTCAGGACCAAAGAGAAAAATATGATATGTTCCTTGAGGTCATGAAAGATTTCAAAGCTCAAAGGACTGACACTGCTGGTGTCATAAAAAGGGTGAAGGAACTATTCAAAGGGCATAACAATTTGATTTTTGGATTTAACACCTTCTTGCCAAAAGGATATGAGATATCGCCTGATGAGGTTGAGGCTCCTACAAAGAAAACAGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATTAAGATACGATTTCAAAATGATGAGTGTGTGTACAAATCATTCTTGGACATTTTGAATATGTACCGCAAAGAGAGCAAGGACAAAAACGAGGTCTATAAGGAGGTTTCTGCCCTTTTTGGGGGCCATCCTGACTTGCTTGAGGAGTTCACCAGATTTTTACCGAATTCTTCTGCAACACCTTCCACACAGAATGCTTCATATGGTCGCAATTCATCTCAGCGTTTAAATGAGCAAAGTTCTACAGCACAACGTTTCCGACGAGATAAGCTTAGTACTTCTCATCTTAGTGTTAATCCTCCCGAGCTGGATGATGACAAAGCAATGAAGAAAGTGCACAAGGAGCAGAGGAAGCGTGTTGCAAAGGAGAATAGGGATAGGAGAGTTCATGATCAGAATGAGAGAGAACCTGATCTTGATAACAGCATGGATTCAAACTTGCGATGTTTTCCTAACAAAAAAAAAATTGTCAAGAAGGCTGAAGGTTTTGGGTTGACTGCAGATTTTTCTTCTTATGATGACAAAGATACCTTAAAGGGCATGTATAATCGAGCATTTAGTTTCTGTGAGAAAGTTAAGGAGAAGTTAGGCAGCGCAAGTGACTACCAGTCATTCTTGAAAAATGGTGAGGAAGAATGCTCTCTGGAGGCTGGGGTTCGTGATCACAATGCGGATGCTGATGATGAGGATGTTGAAAATGCTTCTGAAGCTGGTCAAGATGCCTCAGGTAGTGAGTCTGCTGGTGACCAATGCTCCCAGGAAGAGCATGAGGTGGTGGAAGATATGGAACGTGATGATATTGATGGTAAAGCTGAAAGTGAAGGTGAAGTTGAGGAGACTGTACAATCTACTGGAGGAGATGGCTCATCATTACCATTGTCAGAAATTTCCCTTTTGTCTGTGAAGCCTCTCACAACGCACATATCAGCAGTTTCACTGGAAGAAGGAAAAGATTCCAGGGTTTTCTATGGAAATGATGATTTCTATGTGCTTTTTAGGCTTCATCAAATTCTTTATGAACGGATCTTAGCAGCAAAAACAAATTCAATGAGTGCTGAAGTGAAGTGGAGAATTGTGAAGGATGCTAATTCATCAGATCCATATTCGAGATTTATGAATGCACTCTACAATTTCCTTGATGGATCTGCTGACAATGTAAAGTTTGAGGATGAATGCCGAGCAATTATTGGGAACCAGTCATACATGTTATTCACATTGGACAAATTGATTCAGAAACTGGTCAGACAGCTTCTAGCTGTCGCTACTGATGAGACAGACAATAAGCTTATTCAATTGTTTGAGTATGAAAAGTCCCAGAAACCTGAGAGATTAACCGATAAAGTGTATCATGCAAATGCACGTGTCCTCCTTCATCAAGAGAATATATATCGTTTGGAATGTTCCTCTGGCCCTTCTCGACTATCCATCCAGCTAATGAACAATATGACTGAAAAGCCTGAGGTATTTGCCGTTTCTATTGATCCAAATTTTGCTGTTTGTTATTACAATGAATTTCTGTCAATCTTTCCTGGCAAAATGGAACCCTGTGGCATTATACTACAAAGAAACAAGCGCAAACCTGGTGACTTAGATGAGCTTTCAGCCTTGGATGGTGTTCTAATAATTAATGGATTGGAATGAGTGAAAGGATTTCCTCTAAAAAGAGGCTGTCATGGAGCAAGCCAAAAGTGTGTTCCAATGAACCTTTTTTATGTTGAGCTGTGTTGTGGTGCAACTTTGGTGAAGCCAGTCTTTGGCTTGGAGGCTGTAGAAGTTATTTGGCGTATTACTTTGGAAATTTTGTGGTTCGAGGAGCAGGGTGTGGGCCCAGTTGAGAGCATCTTGAGCGTTGGGATGACCAAGTTGTATGGGTGTTGCACAGATTTCATCAATGATCTATTGTGGAAAGGTGAAGGCAAGATTTTGGAGGTTAGGTGTGGGATTGGGCCAGTGGTTCTTTTCCATTTTGAAGAAGTTGAGGTCCTTGTTTATGATTTTGCTGATGAAGGAAGGACAATGAGTTGTCTTTTCAAGGGAAAGGCTGTAATTGTTTTCGAAAAAATTTACCCGGATTTCATTGTTGCTTCTTGTCAGGCCCCTATTTAG 2577 0.4113 MVVEMKRTRDDVYACSGSGSQFKRTICSSRGDSYGQSHVPGGGAAADVGGNIGGEGATSPKLTTIDALSYLKEVKEMFQDQREKYDMFLEVMKDFKAQRTDTAGVIKRVKELFKGHNNLIFGFNTFLPKGYEISPDEVEAPTKKTVEFEEAISFVNKIKIRFQNDECVYKSFLDILNMYRKESKDKNEVYKEVSALFGGHPDLLEEFTRFLPNSSATPSTQNASYGRNSSQRLNEQSSTAQRFRRDKLSTSHLSVNPPELDDDKAMKKVHKEQRKRVAKENRDRRVHDQNEREPDLDNSMDSNLRCFPNKKKIVKKAEGFGLTADFSSYDDKDTLKGMYNRAFSFCEKVKEKLGSASDYQSFLKNGEEECSLEAGVRDHNADADDEDVENASEAGQDASGSESAGDQCSQEEHEVVEDMERDDIDGKAESEGEVEETVQSTGGDGSSLPLSEISLLSVKPLTTHISAVSLEEGKDSRVFYGNDDFYVLFRLHQILYERILAAKTNSMSAEVKWRIVKDANSSDPYSRFMNALYNFLDGSADNVKFEDECRAIIGNQSYMLFTLDKLIQKLVRQLLAVATDETDNKLIQLFEYEKSQKPERLTDKVYHANARVLLHQENIYRLECSSGPSRLSIQLMNNMTEKPEVFAVSIDPNFAVCYYNEFLSIFPGKMEPCGIILQRNKRKPGDLDELSALDGVLIINGLEXVKGFPLKRGCHGASQKCVPMNLFYVELCCGATLVKPVFGLEAVEVIWRITLEILWFEEQGVGPVESILSVGMTKLYGCCTDFINDLLWKGEGKILEVRCGIGPVVLFHFEEVEVLVYDFADEGRTMSCLFKGKAVIVFEKIYPDFIVASCQAPI 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1703 858 FunFam Paired amphipathic helix protein Sin3 66 128 - -
Dere01g1703 858 PANTHER SIN3B-RELATED 456 622 IPR039774 GO:0003714
Dere01g1703 858 Gene3D Paired amphipathic helix 66 128 IPR036600 GO:0006355
Dere01g1703 858 FunFam Paired amphipathic helix SIN3-like protein 143 214 - -
Dere01g1703 858 Pfam C-terminal domain of Sin3a protein 479 649 IPR031693 -
Dere01g1703 858 MobiDBLite consensus disorder prediction 276 299 - -
Dere01g1703 858 Pfam Paired amphipathic helix repeat 168 211 IPR003822 GO:0006355
Dere01g1703 858 Pfam Paired amphipathic helix repeat 83 127 IPR003822 GO:0006355
Dere01g1703 858 SUPERFAMILY PAH2 domain 141 213 IPR036600 GO:0006355
Dere01g1703 858 SUPERFAMILY PAH2 domain 57 129 IPR036600 GO:0006355
Dere01g1703 858 Gene3D Paired amphipathic helix 142 215 IPR036600 GO:0006355
Dere01g1703 858 ProSiteProfiles PAH domain profile. 144 214 IPR003822 GO:0006355
Dere01g1703 858 MobiDBLite consensus disorder prediction 373 446 - -
Dere01g1703 858 MobiDBLite consensus disorder prediction 407 434 - -
Dere01g1703 858 ProSiteProfiles PAH domain profile. 59 130 IPR003822 GO:0006355
Dere01g1703 858 MobiDBLite consensus disorder prediction 210 302 - -
Dere01g1703 858 MobiDBLite consensus disorder prediction 210 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1703 Dere-ChrDere01 30759260 30773560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1703 47 152 WRKY Transcription Factor Family AT4G12020 47.009 2.56e-21 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere01g1703 Sin3a_C 2.9e-44 No_clan