Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1702 ATGGACGGGGATCAGGAAACAAGTGTCGCTGCTGTGGCTAGGAAGAAGAAGAAGACTGGGTCCATTCAATCCATTTTCATGCATGCCGACACCGTCGATTGGTTTTTCATGGTCCTAGGCGTGCTTGGGTCCATTGGGGACGGCTTCACCACCCCTCTGGTGCTCTTAATTAGTAGCCGCTTGATGAACAATATTGGCAGTGGTCCTACCATGGATCAAAATGCTTTTCTTCATAACATTAATAAGAACGCGGTAGCCTTGCTATATTTGGCTTGTGGGTCATTTATCACTTGCTTCCTCGAGGGGTATTGTTGGACCAGAACAGGCGAAAGACAAGCTGCAAGAATGAGAGCCAGGTACTTGAAAGCAGTGCTCAGACAAGAAGTGGCATACTTCGATCTGCACGTGACAAGCACGTCCGAGGTGATCACCAGCGTCTCCAACGACAGCCTCGTAATTCAAGACACTCTTAGTGAAAAGATTCCAAACTTCATGATGAATGTGTTCATGTTCATCGGTAGCTACATAGCGGCTTTTGCAATGTTGTGGAGGCTGGCTATTGTGGGGTTCCCTTTCGTGGTTCTTCTAGTGATCCCTGGTTTAATATATGGTAGAACTCTAATGGGGTTGGCTAGAAAGACCAGGGAGGAGTACAATCAAGCTGGTACAGTAGTAGAGCAGGCAATATCTTCCATCAGAACCGTCTATTCCTTTGTCGGAGAGAGCAAGACCATAGCCGATTTCTCTGATGCTCTTCACGGATCTGTCAAACTGGGGCTGAAACAGGGCCTAGCTAAAGGCTTAGCCATCGGAAGCAACGGCGTCGTCTTCGCCATCTGGTCTTTCATGTCCTATTACGGTAGCACCATGGTCATGTACCATGGTGCTCAAGGCGGCACCGTCTTCGCTGTTGGCGCTGCCATAGCTGTCGGTGGATTAGCTTTAGGAGCTGCTTTATCCAACATGAAGTACTTCTCGGATGCGAGTTCAGCAGGGGAACGAATAATGGAAGTGATCAAAAGGGTTCCGACGATTGATTCAGACAATATGAGTGGGGAGATTCTGGAGAACGTTTCTGGGGAAGTGGAATTTGATCACGTAGAGTTCGCGTACCCATCGAGGCCGGCCAGCATTATCCTCAACGATTTCTGCTTGAAGATTCCGGCAGGGAAGACGGTGGCCTTAGTGGGTGGGAGTGGATCAGGGAAATCCACAGTGATATCGCTTTTGCAGAGATTTTATGACCCAATTGGGGGAGAGATAAGGCTTGATGGGGTAGCCATTAAGAAGATGCAACTCAAGTGGGTGAGGTCCCAGATGGGGCTGGTGAGCCAAGAGCCTGCTCTGTTCGCAACCAGCATAAAGGAGAACATTCTGTTCGGAAAGGAGGATGCCACCATGGAAGAGATTGTGGAGGCTGCCAAAGCTTCCAATGCTCACAATTTCATTTCAATGTTGCCTTTGGGATACGACACCCAGGTTGGTGAAAGAGGGGTTCAAATGTCGGGGGGGCAAAAGCAGAGGATCGCCATTGCACGAGCAATAATAAAGAAACCGAGACTGCTTCTGCTAGATGAAGCAACCAGCGCATTAGACTCTGAATCAGAACGAGTTGTTCAAGAAGCTCTGGACAAAGCAGCCGTGGGTCGCACTACCATCATCATCGCTCACCGCTTATCTACCATTCGAAACGCCGACGTCATTGCCGTCGTCCAGGGCGGAAAGATCATGGAAATGGGCTCGTACGACGAGCTCATCCAAAACGAAAATGGGCTTTACACCTCTCTGGTTCGTCTCCAACAAACAGAGCAATCCAAAACCCAAGAAGATATCGTCTCTGCTCCGTCTTCTATATCAAACAGGGACATGAACAACACTAGCAGTCGCAGGCTTTCTCTGTTGAGTCGTTCCAGCTCTGCCAGTTCAATAGCACGGAATCCAGCTTCTGTCGCTGACGAAGAAGATGGTCATCATGCTACAGAAGAACAGAAATTCCCTGTTCCTTCGTTTCGGAGATTGTTGGCTCTTAATCTCCCAGAGTGGAAGCAGGCAATTATGGGGTGTATAAGTGCGGTGCTCTTCGGTGCGGTTCAGCCACTGTACGCATTCGCAATGGGGTCTATGATATCGGTGTATTTTCTGACGGACCACAATGAGATCAAAGAGAAGACGAGGATTTACGCGCTCAGTTTTCTGGGGTTGGCTGTGTTCTCTTTGCTTATCAATATAAGCCAGCATTACAGTTTTGCTTACATGGGAGAGTACCTGACCAAAAGGATTAGAGAGAGAATGCTCTCAAAGATACTCACATTCGAAGTTGGATGGTTCGACCAGGACGAGAATTCCAGCGGGGCAATTTGCTCTAGACTTGCCAAAGACGCCAATGTGGTGAGGTCTCTGGTGGGAGATAGATCGGCTCTACTGGTACAAACTTTCTCAGCAGTGATAATAGCGTGCACAATGGGCTTGGTCATTGCATGGAGACTCGCCATTGTTATGATTGCCGTCCAACCCATCATCATTGCTTGCTTTTACACTCGACGCGTCCTACTCAAGAGCATGTCTAGTAAAGCCATCAAAGCCCAAGACGAATGCAGCAAGCTAGCTGCCGAAGCTGTTTCCAATGTCCGAACCGTCACTGCATTCTCTTCCCAAGACCGCATACTCAAAATGCTCGAGATGGCCCAAGAAGGCCCAAGGCGAGAGAGCATTCGTCAATCCTGGTACGCAGGTGTTGGGCTTGCCTGTTCCCAAGGCCTCATGTCTTGTACTTGGTCTCTAGACTTTTGGTATGGCGGCAAGCTCATCTCGCAAGGTTACATCACCTCCAAATCACTGTTTGAGACCTTCATGATTTTGGTTAGTACAGGCCGTGTCATTGCCGATGCTGGAAGTATGACCTCAGACCTTGCTAAAGGCTCTGATTCTGTGGGCTCTGTTTTCGCAGTACTAGATAGGTACACTAAAATTGAGCCCGAAGATCCAGATGGATTCAAGCCTGATAAGATAACGGGCCTGATAGAACTTCGGGATGTTCATTTTGTGTACCCGGCTAGGCCCGATGTGATGATCTTTCAAGCCTTCTCACTCAGAATCGAAGCCGGGAAGTCAACAGCGTTAGTGGGCCAAAGTGGGTCTGGTAAATCAACCATAATAGGCTTAATAGAGAGATTCTATGACCCACTCAAAGGGACGGTGACCATTGACGGCAGAGACATAAAGTCGTATCAACTTAGATCACTTAGGAAATACATAGCCCTAGTGAGCCAAGAGCCCACGTTATTTAGTGGGACCATAAGAGAGAACATAGCATACGGAGCGTCTGGTAAGGTTGACGAAGCAGAGATCATAGAGGCAGCTAAGGCAGCGAACGCGCATGATTTCATCGGAAGCCTGAAGGATGGATACGCCACGTCGTGTGGTGACAGAGGAGTGCAGCTTTCAGGTGGTCAAAAGCAGAGGATAGCAATAGCGAGAGCCATATTGAAGAACCCAGCGGTGTTGCTACTGGACGAAGCGACGAGCGCGCTTGATAGCCAATCGGAGAAGGTGGTGCAAGACGCGCTGGAGCACGTGATGGTGGGGAGGACGAGCGTGGTGGTGGCCCACAGGTTGAGTACCATACAGAGCTGTGATCTAATAGCTGTGTTGGATAAAGGGAAAGTGGTGGAGAAAGGGACTCACTCGTCTCTGATGGCGAAGGGACCAGGGGGAGCTTATCACTCTCTGGTGAGTCTTCAGACGAGTCCACCCAACGCTGACCGATCAATGGTCAACGGCGATTAA 3786 0.4921 MDGDQETSVAAVARKKKKTGSIQSIFMHADTVDWFFMVLGVLGSIGDGFTTPLVLLISSRLMNNIGSGPTMDQNAFLHNINKNAVALLYLACGSFITCFLEGYCWTRTGERQAARMRARYLKAVLRQEVAYFDLHVTSTSEVITSVSNDSLVIQDTLSEKIPNFMMNVFMFIGSYIAAFAMLWRLAIVGFPFVVLLVIPGLIYGRTLMGLARKTREEYNQAGTVVEQAISSIRTVYSFVGESKTIADFSDALHGSVKLGLKQGLAKGLAIGSNGVVFAIWSFMSYYGSTMVMYHGAQGGTVFAVGAAIAVGGLALGAALSNMKYFSDASSAGERIMEVIKRVPTIDSDNMSGEILENVSGEVEFDHVEFAYPSRPASIILNDFCLKIPAGKTVALVGGSGSGKSTVISLLQRFYDPIGGEIRLDGVAIKKMQLKWVRSQMGLVSQEPALFATSIKENILFGKEDATMEEIVEAAKASNAHNFISMLPLGYDTQVGERGVQMSGGQKQRIAIARAIIKKPRLLLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIRNADVIAVVQGGKIMEMGSYDELIQNENGLYTSLVRLQQTEQSKTQEDIVSAPSSISNRDMNNTSSRRLSLLSRSSSASSIARNPASVADEEDGHHATEEQKFPVPSFRRLLALNLPEWKQAIMGCISAVLFGAVQPLYAFAMGSMISVYFLTDHNEIKEKTRIYALSFLGLAVFSLLINISQHYSFAYMGEYLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRSALLVQTFSAVIIACTMGLVIAWRLAIVMIAVQPIIIACFYTRRVLLKSMSSKAIKAQDECSKLAAEAVSNVRTVTAFSSQDRILKMLEMAQEGPRRESIRQSWYAGVGLACSQGLMSCTWSLDFWYGGKLISQGYITSKSLFETFMILVSTGRVIADAGSMTSDLAKGSDSVGSVFAVLDRYTKIEPEDPDGFKPDKITGLIELRDVHFVYPARPDVMIFQAFSLRIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGTVTIDGRDIKSYQLRSLRKYIALVSQEPTLFSGTIRENIAYGASGKVDEAEIIEAAKAANAHDFIGSLKDGYATSCGDRGVQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKVVQDALEHVMVGRTSVVVAHRLSTIQSCDLIAVLDKGKVVEKGTHSSLMAKGPGGAYHSLVSLQTSPPNADRSMVNGD 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1702 1261 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 685 972 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g1702 1261 SUPERFAMILY ABC transporter transmembrane region 666 992 IPR036640 GO:0005524|GO:0016020
Dere01g1702 1261 SUPERFAMILY ABC transporter transmembrane region 33 343 IPR036640 GO:0005524|GO:0016020
Dere01g1702 1261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 997 1247 IPR027417 -
Dere01g1702 1261 CDD ABC_MTABC3_MDL1_MDL2 1007 1247 - -
Dere01g1702 1261 FunFam ABC transporter B family member 1 24 361 - -
Dere01g1702 1261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 600 IPR027417 -
Dere01g1702 1261 FunFam Putative ABC transporter B family member 8 650 995 - -
Dere01g1702 1261 Pfam ABC transporter 380 529 IPR003439 GO:0005524
Dere01g1702 1261 SMART AAA_5 1034 1227 IPR003593 GO:0016887
Dere01g1702 1261 SMART AAA_5 389 592 IPR003593 GO:0016887
Dere01g1702 1261 Pfam ABC transporter 1027 1175 IPR003439 GO:0005524
Dere01g1702 1261 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 335 - -
Dere01g1702 1261 MobiDBLite consensus disorder prediction 604 646 - -
Dere01g1702 1261 CDD ABC_6TM_Pgp_ABCB1_D2_like 674 990 - -
Dere01g1702 1261 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524|GO:0016887
Dere01g1702 1261 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Dere01g1702 1261 FunFam ABC transporter B family member 4 997 1254 - -
Dere01g1702 1261 FunFam ABC transporter B family member 4 352 608 - -
Dere01g1702 1261 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524|GO:0016887
Dere01g1702 1261 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1007 1244 IPR003439 GO:0005524
Dere01g1702 1261 Pfam ABC transporter transmembrane region 685 954 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g1702 1261 Pfam ABC transporter transmembrane region 38 304 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g1702 1261 Gene3D - 352 601 IPR027417 -
Dere01g1702 1261 MobiDBLite consensus disorder prediction 604 662 - -
Dere01g1702 1261 CDD ABC_MTABC3_MDL1_MDL2 362 600 - -
Dere01g1702 1261 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 327 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g1702 1261 Gene3D ABC transporter type 1, transmembrane domain 24 976 IPR036640 GO:0005524|GO:0016020
Dere01g1702 1261 Gene3D - 997 1255 IPR027417 -
Dere01g1702 1261 PANTHER ABC TRANSPORTER B FAMILY 13 736 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1702 Dere-ChrDere01 30736702 30743408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1702 30 610 Calmodulin-binding Proteins AT2G36910 35.294 1.81e-103 355