Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1694 ATGGGAAGACCACCTTGCTGCGATAAATCCAATGTCAAAAGGGGCCTTTGGACTGCCGAAGAGGATGCTAAAATACTTGCTTATGTGTCCAATCATGGGATAGGAAATTGGACATTGGTTCCTAAGAAAGCAGGGTTAAACAGATGTGGAAAGAGCTGTAGGCTTAGATGGACAAATTATCTAAGACCTGACCTCAAGCACGATAGCTTCACTCCGCAAGAGGAAGAGCTTATTATTAACCTTCATGAAGCTATAGGAAGCAGATGGTCTTTTATTGCAAAGAGACTACCTGGGAGAACAGACAACGATGTGAAGAACCACTGGAACACAAAACTGAGGAAGAAGCTTATGAAGATGGGAATTGACCCAGTGACCCATAAGCCGGTGTCCCAAGTTCTCTCTGACTTGGGAAGTATCAGTAGTCTCCCAAATATTACAACTGAACCATCAGGTACAAACACCAACCTGATGGTTTCTGATAAGCAAGCTCAAGAAGTGCAGTTCCAAGTGATAAACCCAGAGAATAATGTCCAGTCCCACCATATCTCTAACAATGAAGCTGCGTCTTCATGTTCATCATCATCACCGTCTTCTTCTTCTTCTTCCTCCTCTAACATCCCACGACTAAGCTCACCACCACAAGTATTTTGTGCTAATGCTCCTCCTCCTCGTTCCTCCTTCGATTGGAGCGAGTTTCTTCTGAGTGACTCGTTCATGTGCACCGAGTTTCAGCAGCTGAACCAGCATGACATGGAGGGGGTTTTGTCCTCGTTGGGTCCCTCAGTCATAACGCAAAACCATATTCAAGTTTCTAATTACAATGCAAGTGAGGATTCTGGGGTTGTGGCTTATGAAGCAACTGTGAAGTGTCAAATTAGTAATAAGCAGTATTGTGAAGGCACTTCATCTACAGGAGATTCATTCGTGGAGGCTATTTTGGATAGGGATAGTGAGATCAGGGCAGCATTTCCTGAGCTCTTGGATGGATCCTTTGATTACTAG 1002 0.4421 MGRPPCCDKSNVKRGLWTAEEDAKILAYVSNHGIGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLKHDSFTPQEEELIINLHEAIGSRWSFIAKRLPGRTDNDVKNHWNTKLRKKLMKMGIDPVTHKPVSQVLSDLGSISSLPNITTEPSGTNTNLMVSDKQAQEVQFQVINPENNVQSHHISNNEAASSCSSSSPSSSSSSSSNIPRLSSPPQVFCANAPPPRSSFDWSEFLLSDSFMCTEFQQLNQHDMEGVLSSLGPSVITQNHIQVSNYNASEDSGVVAYEATVKCQISNKQYCEGTSSTGDSFVEAILDRDSEIRAAFPELLDGSFDY 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1694 333 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dere01g1694 333 CDD SANT 69 112 IPR001005 -
Dere01g1694 333 MobiDBLite consensus disorder prediction 183 207 - -
Dere01g1694 333 FunFam Transcription factor RAX3 7 67 - -
Dere01g1694 333 PANTHER F14D16.11-RELATED 1 333 - -
Dere01g1694 333 CDD SANT 17 61 IPR001005 -
Dere01g1694 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Dere01g1694 333 FunFam transcription factor MYB80 69 129 - -
Dere01g1694 333 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dere01g1694 333 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dere01g1694 333 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Dere01g1694 333 Gene3D - 7 67 - -
Dere01g1694 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Dere01g1694 333 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dere01g1694 333 SMART sant 13 63 IPR001005 -
Dere01g1694 333 SMART sant 66 114 IPR001005 -
Dere01g1694 333 Gene3D - 68 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1694 Dere-ChrDere01 30583720 30585113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1694 1 333 MYB Transcription Factor Family AT3G28470 46.705 7.21e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere01g1694 Myb_DNA-binding 2.4e-15 CL0123