Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1688 ATGCCGTTCCGATTTCCCAACACCCACCTTCTGGAGAACTTAATGTTTCTGAGGATTTTGGAATTGATCATGATTATTAATGGACGCACAAACAAGGCATGTGGAGCATGCAAATTCCAAAGAAGAAGATGCACAAAAGAATGCATGCTAGCTCCATATTTCCCTGCAGATCAACCCCGAAGGTTCCACAATGCTCACCGTTTGTATGGAGTCTCCAACATGAAGAAAATTCTGAAACAGGTCCCTCTAAAGCAAAGAAACGATGCCATGTCTTCTATTATTTTTGAAAGTGACATGCGAGCCAAATTTCCTGTCGAAGGATGTTATGGTATTCAACAGCACTACAAATATCTGATTCGCAAGAGCATAGATGAACTAAATAACGTGAAGATGCGACTTGCTATGTGCAAAAATCAACCGTATATACCTTACAAAATTTCTTCCATTGTACCAGAGTTATACTCACACACAACTTATGCGACGGAAAATCAACAATTACAGTTTGGTATGTCTTCATCTAGTCCTATATTTGAAGGCAATGATGATGCTGACATTGATGCAACTTATCTTCCGAAAGACGATGATTTGTCCAGGAAACACTCACTTGCTCTCCAAGAATCTCATTATAACAACCATATGGATGTTGATGTCAGAGAAAAGCATTTTAATATGACAGAAACGAGAGATTCATCCAACAAAGAAAATCAATTAGATATTCTTACTGTTTATGATGATATTTCCTTTGATGCAATTGCCGATAATAAATCATATTTTACTAAAGTCAAGAATACAACAGCGTATTCCGGGAATGAAGTGAAGAATGCAAGAGTCCACAGCTTAATCAGAAAGAGTTTCTGA 858 0.3753 MPFRFPNTHLLENLMFLRILELIMIINGRTNKACGACKFQRRRCTKECMLAPYFPADQPRRFHNAHRLYGVSNMKKILKQVPLKQRNDAMSSIIFESDMRAKFPVEGCYGIQQHYKYLIRKSIDELNNVKMRLAMCKNQPYIPYKISSIVPELYSHTTYATENQQLQFGMSSSSPIFEGNDDADIDATYLPKDDDLSRKHSLALQESHYNNHMDVDVREKHFNMTETRDSSNKENQLDILTVYDDISFDAIADNKSYFTKVKNTTAYSGNEVKNARVHSLIRKSF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1688 285 ProSiteProfiles LOB domain profile. 32 133 IPR004883 -
Dere01g1688 285 Pfam Lateral organ boundaries (LOB) domain 33 128 IPR004883 -
Dere01g1688 285 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 31 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1688 Dere-ChrDere01 30419264 30420121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1688 24 135 AS2 family AT3G47870 48.214 6.50e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere01g1688 LOB 1.7e-33 No_clan