Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1676 ATGAAAGGTATGCCACTCGCGGCCAGGAGTCTTGGCCCTCAATCTATCACCGTTTGGTTCCGAACGTTACACATAATGGCAGAAAGTGTTGGTCAAGTTACCCTAATCTTCTTGGCCACTCTAGCCATTACTGTTCCATGCCTCCAAGCCACCATTGCTGAGAATGACGAATATCTTTTAAGACGATCCGAGGAAGCCCGTAGAGCAGCTCTTCAGGCTTATGAGCCTGACCCTCTGAATGTTACGTCTGAGCTCAACTTCCACGTTCACTTGGCCTTGAAGGAGAGCAATAGGAGGGAACTAAGGGGAAAGCGCAGATACAGAGGACCATGCATGGCGACCAACCCAATTGACCGGTGCTGGAGGTGCAGGCCTGATTGGGCCATGGACCGGATGAGGTTAGCGAAATGCGTGAAGGGCTTTGGGCGGAGGACCACCGGAGGATTGGGTGGGCCGATATACGTGGTCACAGACCCCTCCGACAACGACGTGGTGAACCCGAGAGTCGGGACTCTTCGGCACGCCGTGGTCCAGGATGGGCCATTGTGGATCATATTCGCACGCAACATGGTGATCAATTTGCAACAGGAATTGCTCGTAAACTCGAACAAGACGATTGACGGTCGAGGAGCCAACATAATAATTACAGGAGGGTCTAGCTTTTCTCTATTTTACGTTACCAATGTGATCATCCACAACATTCGCATCCACGACATCATGTCCAAGAACGGTGGTCTTATTAGGCACTCCCCCGAGCATGTGGGTATAAGAACCAGGAGCGATGGGGATGCCATCTCCATCTTCGGCTCCTCAAACATCTGGATCGATCATGTTTCTATGTCCAGAACCGCCGATGGGCTTATCGACGCCATCCAAGGCTCCACCGCCATCACTATCTCCAACTGCCACATGACCCGTCATAATGACGTGATGCTGTTCGGAGCAAGCGATGTGTACACAGGGGACAAGATAATGCAGATTACAGTGGCATTCAACCATTTTGGGCAGGGATTGATACAGAGGATGCCCAGAGCGAGATATGGGTTCGTGCATGTGGTGAACAACGATTACACTCACTGGCTAATGTACGCCATTGGCGGTAGCTCAGCTCCAACCATACTGAGCCAGGGAAACCGTTTCATTGCTCCGAACGACTTGTCAGCGAAGGAGGTGACGCACAGAGACTACGCGACGCCGGCAGAATGGAGCAGATGGAAGTGGACGTCGGAGAGGGACCAGTTCTTGAACGGAGCCACATTTGTGCCGTCCGGTGGGCCTATTGGCCCCCACCCCTTCGCGAGGAAATTTATAGTCAGGCCCAGAGATGGATCCCATGTGTCGAGGCTTACGAGGTTTACTGGTCAGCTCAATTGCCGAGTGGGCTTTCCTTGTTAG 1395 0.5247 MKGMPLAARSLGPQSITVWFRTLHIMAESVGQVTLIFLATLAITVPCLQATIAENDEYLLRRSEEARRAALQAYEPDPLNVTSELNFHVHLALKESNRRELRGKRRYRGPCMATNPIDRCWRCRPDWAMDRMRLAKCVKGFGRRTTGGLGGPIYVVTDPSDNDVVNPRVGTLRHAVVQDGPLWIIFARNMVINLQQELLVNSNKTIDGRGANIIITGGSSFSLFYVTNVIIHNIRIHDIMSKNGGLIRHSPEHVGIRTRSDGDAISIFGSSNIWIDHVSMSRTADGLIDAIQGSTAITISNCHMTRHNDVMLFGASDVYTGDKIMQITVAFNHFGQGLIQRMPRARYGFVHVVNNDYTHWLMYAIGGSSAPTILSQGNRFIAPNDLSAKEVTHRDYATPAEWSRWKWTSERDQFLNGATFVPSGGPIGPHPFARKFIVRPRDGSHVSRLTRFTGQLNCRVGFPC 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1676 464 Gene3D - 114 457 IPR012334 -
Dere01g1676 464 Pfam Pectate lyase 197 380 IPR002022 -
Dere01g1676 464 Pfam Pectate lyase, N terminus 52 101 IPR007524 GO:0030570
Dere01g1676 464 SUPERFAMILY Pectin lyase-like 106 457 IPR011050 -
Dere01g1676 464 SMART amb_all 189 386 IPR002022 -
Dere01g1676 464 PRINTS Pollen allergen Amb family signature 137 154 IPR018082 -
Dere01g1676 464 PRINTS Pollen allergen Amb family signature 435 458 IPR018082 -
Dere01g1676 464 PRINTS Pollen allergen Amb family signature 363 382 IPR018082 -
Dere01g1676 464 PRINTS Pollen allergen Amb family signature 341 360 IPR018082 -
Dere01g1676 464 PRINTS Pollen allergen Amb family signature 261 282 IPR018082 -
Dere01g1676 464 PRINTS Pollen allergen Amb family signature 405 429 IPR018082 -
Dere01g1676 464 PRINTS Pollen allergen Amb family signature 197 213 IPR018082 -
Dere01g1676 464 PRINTS Pollen allergen Amb family signature 161 186 IPR018082 -
Dere01g1676 464 PANTHER PECTATE LYASE 18-RELATED 66 461 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1676 Dere-ChrDere01 30216411 30219934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1676 31 464 Polysaccharide Lyase AT1G14420 56.222 0.0 517