Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1662 ATGGGATCAGGTGACGCTGATAAGGTTGTCGAAGCAGGAGGTCCGCGATGTTGGATGAAATTGAGCTTCTTCGGTAGTTGCTTATTTTTTAAGTCCAAAGTGGACGGCTCTGGAAGTAAATCTACCAGAAAAGCCAACAGCAATGCACCTTCCACCTCCTACGCCAATGAGGAAATAAATATTTCTTCCAACCTTCGAAAGTTTTCATTTGACGAGCTTAAGGGTGTCACAAAGAACTTTAGAATTGACAGTATTCTTGGCGAGGGGGGCTTTGGATGTGTTTTCAAAGGTTGGATGAGTCAGAATATGATCACTGCAGCAAAAGCTGGCACGGGGATTCCAGTTGCTGTAAAGATTCTTAACCATGAAGGACTTCAGGGCCATAGAGAATGGCTTGCTGAAGTTAATTACCTTGGTGAACTTCATCATCCAAATCTGGTTAAATTAATAGGGTACTGCATTGAGGGTAACCAAAGGCTACTAGTGTATGAGTTTATGCCTCGAGGAAGCTTGGACAACCATCTGTTCAGGAGATCTTTGCCCCTTCCATGGTCCCTGAGAATAAAAGTTGTGCTTGGTGCTGCAAAGGGCCTTGCATATCTGCATGAGGAAGCTGACAAGACAGTGATATTTCGGGACTTTAAAACATCTAATATCCTCTTGGACGCGGACTACAATGCAAAACTTTCTGATTTTGGGCTCGCTAAAGATGGTCCCGAGGGAGACTGTACTCATGTGTCCACTCGAGTGATGGGAACATGTGGCTATGCAGCTCCTGAGTATGTGATGACAGGACATCTTACTGCCAAGAGTGATGTCTATAGTTTTGGAGTAGTTCTGCTTGAACTGTTGACTGGTAGAAAAGCCATGGACAAACATCGACCTAGAGGGGAGCATTGCTTGGTGGAATGGGCAACACCTCTGTTTGGACAAAGACACAGCTTTTACAGACTCATGGATCCTCGACTTCAAGGTCAGTACTCGATCAGAGCAGCTCAACAGGCAATCCAGATAGCTGCTCACTGCCTTAGTCATAACCCCAAAGCAAGGCCCCGCATGACTGAGGTTGTTGAAGCCTTAGAGCCTTTGCTTCAGCTCAATGACATGGCTATCTCTTCACCTTCATTCCAGTCCGTGCAGGCTAGTAGGTATGCTCAGAGAACAGAGTCTGGCTTCTCAAGGGCTGGCTCATCGTCCAGGAGCTTACCCAGTTCCCCATTTCGCCCTAACTTTCTTTTTCCATCTCCTAGTCCTAAGGGCAGGAAGCCATGA 1272 0.4631 MGSGDADKVVEAGGPRCWMKLSFFGSCLFFKSKVDGSGSKSTRKANSNAPSTSYANEEINISSNLRKFSFDELKGVTKNFRIDSILGEGGFGCVFKGWMSQNMITAAKAGTGIPVAVKILNHEGLQGHREWLAEVNYLGELHHPNLVKLIGYCIEGNQRLLVYEFMPRGSLDNHLFRRSLPLPWSLRIKVVLGAAKGLAYLHEEADKTVIFRDFKTSNILLDADYNAKLSDFGLAKDGPEGDCTHVSTRVMGTCGYAAPEYVMTGHLTAKSDVYSFGVVLLELLTGRKAMDKHRPRGEHCLVEWATPLFGQRHSFYRLMDPRLQGQYSIRAAQQAIQIAAHCLSHNPKARPRMTEVVEALEPLLQLNDMAISSPSFQSVQASRYAQRTESGFSRAGSSSRSLPSSPFRPNFLFPSPSPKGRKP 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1662 423 Gene3D Phosphorylase Kinase; domain 1 60 165 - -
Dere01g1662 423 FunFam Serine/threonine-protein kinase PBS1 166 378 - -
Dere01g1662 423 SUPERFAMILY Protein kinase-like (PK-like) 62 385 IPR011009 -
Dere01g1662 423 MobiDBLite consensus disorder prediction 387 423 - -
Dere01g1662 423 MobiDBLite consensus disorder prediction 387 408 - -
Dere01g1662 423 Gene3D Transferase(Phosphotransferase) domain 1 166 382 - -
Dere01g1662 423 PANTHER OS01G0588500 PROTEIN-RELATED 48 364 - -
Dere01g1662 423 CDD STKc_IRAK 86 363 - -
Dere01g1662 423 ProSitePatterns Protein kinases ATP-binding region signature. 86 118 IPR017441 GO:0005524
Dere01g1662 423 FunFam Serine/threonine-protein kinase BIK1 46 165 - -
Dere01g1662 423 ProSiteProfiles Protein kinase domain profile. 80 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1662 423 Pfam Protein tyrosine and serine/threonine kinase 82 360 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1662 Dere-ChrDere01 30059920 30065202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1662 26 406 Glycoside Hydrolase AT3G07070 45.673 1.98e-113 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Dere01g1662 PK_Tyr_Ser-Thr 6.7e-48 CL0016