Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1661 ATGGCCTTCCCTCCTCACACCTTCATGTTCCACACCCTCGAAGATCACGACCACCTCCATTCTACCTCTTTCAACGCCTTTCCCTCCATGCCACCCAAGCACTTCCAAGGAGGTGCAGTACCTTTGATGTTGAAGCAATCGGTGTCATTTTCAGGGATCGAAAATAAGCATGAGGACGAAGAACTGTCAGATGATGGATCTCAGCTGATTGGGGAGAAGAAGAAGAGGCTGAACATGGAACAAGTGAAGGCACTGGAAAGGAGCTTCGAGTTGGGAAACAAGCTGGAGCCTGAACGCAAAATGCAACTGGCAAAGGCTCTGGGGCTTCAGCCCAGGCAGATCGCCATTTGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCAGCTCGAGAAGGAATATGAAGCCCTCAAGACACAGTTTGAAGCACTCAAGGCTGATAACGATGCCCTCAAGGCTCACAACCACAAACTACACGCTGAGTTACAAGCTCTGAAAGTTAGAGATTCCTGTGAAGGCGGAACTATGAGCCTTAAGAAAGAAACTGAGGTTTGTTGGAGCAATGGAAGTGAGAATAGCTCGGACATTAACCTAGATCTCTCGAGAACACAAATTATAAACAGTCCTGCAGTAGCTTCAGTACAGAATGGTAAAAGCCTTCTTCCCACTAATTCCCTTAAGCCCACCAGCATAACTCAGCTCCTCCAGTGCTCATCAAGATCAGAACTTCAAGATGAAAGCTTCTCCAACATGTTTCATGGCATGGAAGAGCACCAGAACTTCTGGCCCTGGCCGGAGCACCACCAGTTTCATTGA 816 0.4792 MAFPPHTFMFHTLEDHDHLHSTSFNAFPSMPPKHFQGGAVPLMLKQSVSFSGIENKHEDEELSDDGSQLIGEKKKRLNMEQVKALERSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEALKTQFEALKADNDALKAHNHKLHAELQALKVRDSCEGGTMSLKKETEVCWSNGSENSSDINLDLSRTQIINSPAVASVQNGKSLLPTNSLKPTSITQLLQCSSRSELQDESFSNMFHGMEEHQNFWPWPEHHQFH 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1661 271 ProSitePatterns 'Homeobox' domain signature. 103 126 IPR017970 GO:0000981|GO:0006355
Dere01g1661 271 Gene3D - 67 137 - -
Dere01g1661 271 SMART HOX_1 71 132 IPR001356 GO:0003677
Dere01g1661 271 PRINTS Lambda-repressor HTH signature 108 124 IPR000047 GO:0003677
Dere01g1661 271 PRINTS Lambda-repressor HTH signature 99 108 IPR000047 GO:0003677
Dere01g1661 271 Coils Coil 120 168 - -
Dere01g1661 271 ProSiteProfiles 'Homeobox' domain profile. 72 128 IPR001356 GO:0003677
Dere01g1661 271 CDD homeodomain 73 129 IPR001356 GO:0003677
Dere01g1661 271 Pfam Homeodomain 73 126 IPR001356 GO:0003677
Dere01g1661 271 FunFam Homeobox-leucine zipper protein ATHB-13 64 132 - -
Dere01g1661 271 SUPERFAMILY Homeodomain-like 72 130 IPR009057 -
Dere01g1661 271 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 54 252 IPR045224 GO:0003700
Dere01g1661 271 Pfam Homeobox associated leucine zipper 128 166 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1661 Dere-ChrDere01 30048195 30049863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1661 1 266 Homeobox Transcription Factor Family AT5G15150 48.110 1.10e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere01g1661 Homeodomain 6.5e-16 CL0123