Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1658 ATGTCTAGCAGAAGGTCGAGGCAGCAGTCGTCATCAGGGTCTACAACCATCTCCGATGACCAAATCATCCAACTTGTTTCCAAGTTGCGCCAACTTGTTCCTGAGCTTCGCGATAGTCGCCGCTCTCACAAGGTATCAGCATCTAAGGTCCTACAAGAGACCTGCAACTACATCAGGAACTTAAACCGAGAAGTGGACGACTTAAGCCAGCGACTCTCGCAGTTGTTGGCCACAATTGATGCTGATAGCGCTGAGGCTGCTATCATTAGGAGCTTAATTAATCCATAA 288 0.4826 MSSRRSRQQSSSGSTTISDDQIIQLVSKLRQLVPELRDSRRSHKVSASKVLQETCNYIRNLNREVDDLSQRLSQLLATIDADSAEAAIIRSLINP 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1658 95 FunFam Transcription factor ILI6 5 90 - -
Dere01g1658 95 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 61 IPR011598 GO:0046983
Dere01g1658 95 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 25 80 IPR036638 GO:0046983
Dere01g1658 95 Pfam Helix-loop-helix DNA-binding domain 22 61 IPR011598 GO:0046983
Dere01g1658 95 Coils Coil 51 78 - -
Dere01g1658 95 Gene3D - 18 90 IPR036638 GO:0046983
Dere01g1658 95 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
Dere01g1658 95 CDD bHLH_AtPRE_like 17 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1658 Dere-ChrDere01 29988664 29989600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1658 17 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 74.026 1.08e-35 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere01g1658 HLH 3.9e-05 No_clan