Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1650 ATGGGAGAAATCCCCAGAGCCGTCAGATCTAGGGTTTGTTCGACCCGTAAAAAGGCTACATTTAACCCTTCCCGTCGCCCATACTCGTTCACCTGTCGGGCTCTGTGTTTAACTCACTGCAAACAAAGGGGAGGAGCTGATAATCACTTCAATATGGTGCAGCGCCTCACCTATCGTAAGCGTCACAGCTACGCCACTAAATCCAACCAGCACAGGGTCGTCAAAACTCCTGGTGGGAAGTTGGTGTATCAGTCGACAAATAAGAGAGCCAGCGGACCTAAGTGCCCTGTTACTGGGAAGAGGATCCAAGGGATTCCACACTTGAGACCTGCTGAATACAAGAGGTCCAGATTGTCTAGGAACCGTCGCACAGTAAACCGGGCCTATGGAGGTGTATTATCTGGAGGAGCTGTCAGAGAAAGGATAATCCGGGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATTGAAGATCCAGAAGGCAAAAGAAAAGCAAGCATCAAAGAGTTAA 516 0.4826 MGEIPRAVRSRVCSTRKKATFNPSRRPYSFTCRALCLTHCKQRGGADNHFNMVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTNKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQASKS 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1650 171 PANTHER 60S RIBOSOMAL PROTEIN L34 52 167 IPR008195 GO:0003735|GO:0005840|GO:0006412
Dere01g1650 171 Pfam Ribosomal protein L34e 52 147 IPR008195 GO:0003735|GO:0005840|GO:0006412
Dere01g1650 171 Gene3D - 90 171 - -
Dere01g1650 171 Gene3D - 52 88 - -
Dere01g1650 171 ProSitePatterns Ribosomal protein L34e signature. 66 79 IPR018065 -
Dere01g1650 171 PRINTS Ribosomal protein L34 signature 95 105 IPR008195 GO:0003735|GO:0005840|GO:0006412
Dere01g1650 171 PRINTS Ribosomal protein L34 signature 77 94 IPR008195 GO:0003735|GO:0005840|GO:0006412
Dere01g1650 171 PRINTS Ribosomal protein L34 signature 117 139 IPR008195 GO:0003735|GO:0005840|GO:0006412
Dere01g1650 171 PRINTS Ribosomal protein L34 signature 64 77 IPR008195 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1650 Dere-ChrDere01 29894924 29898113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1650 52 171 Cytoplasmic Ribosomal Protein Gene Family AT3G28900 90.000 1.91e-75 219