LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere01g1649	ATGGGAAGACCGCCTTGTTGTGATAAAGAAGGGGTCAAGAAAGGACCTTGGACTCCCGAAGAAGACATTGTATTGGTCTCTTATATACAGGAACATGGTCCTGGCAATTGGAGGGCTGTACCCGCCCATACAGGGCTGTCGCGATGCAGCAAGAGTTGCAGACTTAGATGGACTAATTACCTGAAGCCTGGAATTAAAAGGGGTAACTTCACTGATCAAGAGGAGAAGATGATAATCCATCTTCAGGCTCTTCTGGGCAATAGGTGGGCAGCCATAGCTTCGTACCTTCCACAGAGAACAGACAATGACATAAAAAACTATTGGAATACCCATTTGAAAAAGAAGCTCAAGAAACTGCAAGCAGGTGGCGAAGGCAGCCTTGGAGATGGGTCTTCAGCCTCGCGATCAATGCCCCGAGGGCAGTGGGAAAGAAGGCTCCAAACAGACATCCACATGGCCAAGAGAGCTCTTAGCGAGGCTCTGTCCCCAGATCAGAAGCCTTCTTCTTGCTTATCCGAATCGAACCCTTCTTCTTGCTTATCCGAATCGAACCCTTCTAAACCAACAACCCAGTGCTCAAGCTATGCGTGGAGTACTGATAACATAGCTCGCATGTTGAAAGAATGGGAGAAAAATCCACCAAAGGGCTCCACAACGAGCTCTGCTATGACACACAGTTTTATCAACAACATAGCAGCTTCAGGCACAGATAGTGCTTCGAGCGCCATGACTGAATCGAAGGGAAACAATGCTCAGTTATCTGACGTTACTTTTGAATCCTGGTTTGGGTTTGAGTCTATGGATTATTGTTCTTCGAATTCTGATATTTCCCCCGAGGCTACGCTTTTCCAAGATGAAAGCAAGCCGGATTGTACGGGTGTAGAAATGCCCTTCCATTTTCTGGAGGAGTGGCTTCTAGATGACGCAGCTTGTCATGTAAAAGTTGAAGATGCAAATGCCTATTTCTTCTAG	972	0.4671	MGRPPCCDKEGVKKGPWTPEEDIVLVSYIQEHGPGNWRAVPAHTGLSRCSKSCRLRWTNYLKPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQAGGEGSLGDGSSASRSMPRGQWERRLQTDIHMAKRALSEALSPDQKPSSCLSESNPSSCLSESNPSKPTTQCSSYAWSTDNIARMLKEWEKNPPKGSTTSSAMTHSFINNIAASGTDSASSAMTESKGNNAQLSDVTFESWFGFESMDYCSSNSDISPEATLFQDESKPDCTGVEMPFHFLEEWLLDDAACHVKVEDANAYFF	323

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere01g1649	323	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	65	IPR017930	-
	Dere01g1649	323	MobiDBLite	consensus disorder prediction	119	141	-	-
	Dere01g1649	323	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Dere01g1649	323	CDD	SANT	16	61	IPR001005	-
	Dere01g1649	323	SMART	sant	13	63	IPR001005	-
	Dere01g1649	323	SMART	sant	66	114	IPR001005	-
	Dere01g1649	323	MobiDBLite	consensus disorder prediction	162	193	-	-
	Dere01g1649	323	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	1	234	-	-
	Dere01g1649	323	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	66	116	IPR017930	-
	Dere01g1649	323	MobiDBLite	consensus disorder prediction	158	193	-	-
	Dere01g1649	323	CDD	SANT	69	111	IPR001005	-
	Dere01g1649	323	Pfam	Myb-like DNA-binding domain	67	112	IPR001005	-
	Dere01g1649	323	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Dere01g1649	323	FunFam	Transcription factor MYB30	68	126	-	-
	Dere01g1649	323	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Dere01g1649	323	Gene3D	-	69	129	-	-
	Dere01g1649	323	Gene3D	-	13	66	-	-
	Dere01g1649	323	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Dere01g1649	323	FunFam	MYB-related transcription factor	13	66	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere01g1649	Dere-ChrDere01	29880765	29881962	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere01g1649	1	310	MYB Transcription Factor Family	AT5G62470	49.859	1.57e-102	303

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Dere01g1649		Myb_DNA-binding	5.8e-16	CL0123